ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 1061.00 0.05 2.19 51.26 EIF4A2-219 retained intron GM12878 (Cell line)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 779.00 0.04 1.61 65.57 EIF4A2-219 retained intron GM12878 (Cell line)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 1028.00 0.05 2.12 34.72 EIF4A2-219 retained intron GM12878 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 5430.00 0.25 11.22 86.8 EIF4A2-219 retained intron GM12878 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 1197080.00 54.02 2472.43 87.76 EIF4A2-219 retained intron GM12878 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 1976.00 0.09 4.08 100.0 EIF4A2-219 retained intron GM12878 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 952307.00 42.97 1966.88 97.25 EIF4A2-219 retained intron GM12878 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 1797.00 0.08 3.71 100.0 EIF4A2-219 retained intron GM12878 (Cell line)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 3115.00 0.14 6.43 71.15 EIF4A2-219 retained intron GM12878 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 4443.00 0.20 9.18 100.0 EIF4A2-219 retained intron GM12878 (Cell line)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 94682.00 96.98 195.56 100.0 RPS8-207 protein coding CDS not defined GM12878 (Cell line)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 318.00 5.39 0.66 100.0 RPL7A-206 protein coding CDS not defined GM12878 (Cell line)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 904.00 15.32 1.87 100.0 RPL7A-206 protein coding CDS not defined GM12878 (Cell line)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 3126.00 52.97 6.46 100.0 RPL7A-206 protein coding CDS not defined GM12878 (Cell line)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 137065.00 43.31 283.09 99.7 RPL21-209 retained intron GM12878 (Cell line)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 168183.00 53.15 347.36 95.35 RPL21-209 retained intron GM12878 (Cell line)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 1993.00 0.63 4.12 100.0 RPL21-209 retained intron GM12878 (Cell line)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 1188.00 0.38 2.45 100.0 RPL21-209 retained intron GM12878 (Cell line)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 368.00 0.12 0.76 100.0 RPL21-209 retained intron GM12878 (Cell line)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 8441.00 1.19 17.43 100.0 RPL13A-212 retained intron GM12878 (Cell line)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 883.00 0.12 1.82 100.0 RPL13A-212 retained intron GM12878 (Cell line)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 411.00 0.06 0.85 9.93 RPL13A-212 retained intron GM12878 (Cell line)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 565504.00 79.65 1167.99 99.06 RPL13A-212 retained intron GM12878 (Cell line)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 12.00 0.00 0.02 100.0 RPL13A-212 retained intron GM12878 (Cell line)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 485.00 0.07 1.00 100.0 RPL13A-212 retained intron GM12878 (Cell line)