ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 9945.00 5.26 20.54 100.0 SNORD12B-201 snoRNA GM12878 (Cell line)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 2521.00 1.33 5.21 100.0 SNORD12B-201 snoRNA GM12878 (Cell line)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 8.00 0.04 0.02 100.0 Y_RNA.609-201 misc RNA GM12878 (Cell line)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 6433.00 46.41 13.29 100.0 Y_RNA.612-201 misc RNA GM12878 (Cell line)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 179.00 1.01 0.37 100.0 SNORD71-201 snoRNA GM12878 (Cell line)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 15624.00 88.18 32.27 97.59 SNORD71-201 snoRNA GM12878 (Cell line)
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 1064.00 6.00 2.20 100.0 SNORD71-201 snoRNA GM12878 (Cell line)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 2996.00 17.87 6.19 64.85 MIR194-2HG-201 lncRNA GM12878 (Cell line)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 12867.00 76.75 26.58 91.21 MIR194-2HG-201 lncRNA GM12878 (Cell line)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 9278.00 15.97 19.16 100.0 LINC01783-201 lncRNA GM12878 (Cell line)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 5419.00 99.54 11.19 100.0 RPS7P15-201 processed pseudogene GM12878 (Cell line)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 121.00 0.87 0.25 100.0 SNORD62B-201 snoRNA GM12878 (Cell line)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 602.00 4.33 1.24 100.0 SNORD62B-201 snoRNA GM12878 (Cell line)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 35.00 0.25 0.07 100.0 SNORD62B-201 snoRNA GM12878 (Cell line)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 1518.00 10.92 3.14 100.0 SNORD62B-201 snoRNA GM12878 (Cell line)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 9244.00 66.48 19.09 93.8 SNORD62B-201 snoRNA GM12878 (Cell line)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 20055.00 97.73 41.42 100.0 MRPL32-203 nonsense mediated decay GM12878 (Cell line)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 1507.00 92.74 3.11 100.0 ENST00000436739 lncRNA GM12878 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 1355.00 8.04 2.80 100.0 TMEM107-204 protein coding GM12878 (Cell line)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 1235.00 7.32 2.55 37.78 TMEM107-204 protein coding GM12878 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 623.00 3.69 1.29 100.0 TMEM107-204 protein coding GM12878 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 32.00 0.19 0.07 17.39 TMEM107-204 protein coding GM12878 (Cell line)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 2286.00 44.11 4.72 100.0 SNHG16-201 lncRNA GM12878 (Cell line)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 1381.00 26.65 2.85 67.27 SNHG16-201 lncRNA GM12878 (Cell line)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 1.00 1.30 0.00 100.0 SNHG14-207 lncRNA GM12878 (Cell line)