ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 132942.00 91.11 274.58 100.0 SNORD69-201 snoRNA GM12878 (Cell line)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 1642.00 1.13 3.39 100.0 SNORD69-201 snoRNA GM12878 (Cell line)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 3426.00 48.10 7.08 94.17 SNORD70-201 snoRNA GM12878 (Cell line)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 9562.00 2.36 19.75 100.0 B4GALNT2-202 protein coding GM12878 (Cell line)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 289930.00 71.47 598.82 83.05 B4GALNT2-202 protein coding GM12878 (Cell line)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 8590.00 92.88 17.74 100.0 NDE1-202 protein coding GM12878 (Cell line)
ENST00000401172.1 ENST00000401172.1_46_67_+ 46–67 19.00 95.00 0.04 100.0 MIR208B-201 miRNA GM12878 (Cell line)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 70.00 60.34 0.14 100.0 MIR450B-201 miRNA GM12878 (Cell line)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 80.00 58.82 0.17 100.0 MIR887-201 miRNA GM12878 (Cell line)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 1.00 100.00 0.00 100.0 MIR889-201 miRNA GM12878 (Cell line)
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 892.00 71.42 1.84 100.0 SNORD111-201 snoRNA GM12878 (Cell line)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 9529.00 29.88 19.68 55.07 SNORD88A-201 snoRNA GM12878 (Cell line)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 1158.00 96.02 2.39 100.0 MIR548K-201 miRNA GM12878 (Cell line)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 355.00 53.38 0.73 100.0 MIR320B2-201 miRNA GM12878 (Cell line)
ENST00000408537.1 ENST00000408537.1_15_35_+ 15–35 929.00 92.90 1.92 100.0 MIR1271-201 miRNA GM12878 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 2426.00 2.14 5.01 100.0 SNORD100-201 snoRNA GM12878 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 102965.00 91.03 212.66 100.0 SNORD100-201 snoRNA GM12878 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 371.00 0.33 0.77 100.0 SNORD100-201 snoRNA GM12878 (Cell line)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 72.00 0.06 0.15 100.0 SNORD100-201 snoRNA GM12878 (Cell line)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 1178.00 50.91 2.43 100.0 SNORD111B-201 snoRNA GM12878 (Cell line)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 641.00 28.57 1.32 100.0 RNU2-36P-201 snRNA GM12878 (Cell line)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 2.00 0.09 0.00 100.0 RNU2-36P-201 snRNA GM12878 (Cell line)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 2493.00 1.22 5.15 100.0 SNORD19C-201 snoRNA GM12878 (Cell line)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 178443.00 87.44 368.55 93.49 SNORD19C-201 snoRNA GM12878 (Cell line)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 164020.00 86.73 338.76 96.91 SNORD12B-201 snoRNA GM12878 (Cell line)