ENCFF001RER
Library Details
| Organism: | Homo Sapiens |
|---|---|
| Biosample: | GM12878 (Cell line) |
| GEO DB ID: | Not available |
| ENCODE Experiment ID: | ENCSR000AEJ |
| Description: | Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study. |
|---|---|
| Author: | Thomas Gingeras, CSHL |
sncRNAs in this Library
| Precursor Transcript ID | sncRNA Name | sncRNA position in precursor | Expression | Expression Fraction | Expression (CPM) | Prominence | Transcript Name | Transcript Type | Biosample |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000387372.1 | ENST00000387372.1_1_55_+ | 1–55 | 3718.00 | 5.78 | 7.68 | 100.0 | MT-TQ-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387372.1 | ENST00000387372.1_1_32_+ | 1–32 | 10795.00 | 16.79 | 22.30 | 55.86 | MT-TQ-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387377.1 | ENST00000387377.1_1_31_+ | 1–31 | 22379.00 | 54.34 | 46.22 | 96.11 | MT-TM-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387377.1 | ENST00000387377.1_1_51_+ | 1–51 | 2153.00 | 5.23 | 4.45 | 100.0 | MT-TM-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387405.1 | ENST00000387405.1_1_24_+ | 1–24 | 1779.00 | 22.69 | 3.67 | 100.0 | MT-TC-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_65_+ | 1–65 | 80842.00 | 12.38 | 166.97 | 100.0 | MT-TY-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_50_+ | 1–50 | 436.00 | 0.07 | 0.90 | 100.0 | MT-TY-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_28_+ | 1–28 | 9990.00 | 1.53 | 20.63 | 100.0 | MT-TY-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_32_+ | 1–32 | 338694.00 | 51.87 | 699.53 | 93.18 | MT-TY-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_56_+ | 1–56 | 2412.00 | 0.37 | 4.98 | 100.0 | MT-TY-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_37_+ | 1–37 | 136227.00 | 20.86 | 281.36 | 84.64 | MT-TY-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387419.1 | ENST00000387419.1_1_51_+ | 1–51 | 140.00 | 11.78 | 0.29 | 100.0 | MT-TD-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387421.1 | ENST00000387421.1_1_58_+ | 1–58 | 2690.00 | 6.54 | 5.56 | 100.0 | MT-TK-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387421.1 | ENST00000387421.1_1_52_+ | 1–52 | 16279.00 | 39.60 | 33.62 | 100.0 | MT-TK-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387421.1 | ENST00000387421.1_1_28_+ | 1–28 | 2424.00 | 5.90 | 5.01 | 100.0 | MT-TK-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387421.1 | ENST00000387421.1_1_31_+ | 1–31 | 128.00 | 0.31 | 0.26 | 100.0 | MT-TK-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387449.1 | ENST00000387449.1_1_20_+ | 1–20 | 8940.00 | 21.11 | 18.46 | 76.16 | MT-TS2-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387449.1 | ENST00000387449.1_1_26_+ | 1–26 | 17254.00 | 40.75 | 35.64 | 100.0 | MT-TS2-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387449.1 | ENST00000387449.1_1_53_+ | 1–53 | 715.00 | 1.69 | 1.48 | 100.0 | MT-TS2-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387456.1 | ENST00000387456.1_1_31_+ | 1–31 | 24072.00 | 59.86 | 49.72 | 100.0 | MT-TL2-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_1_57_+ | 1–57 | 355.00 | 0.16 | 0.73 | 100.0 | MT-TE-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_13_67_+ | 13–67 | 2534.00 | 1.11 | 5.23 | 100.0 | MT-TE-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_1_62_+ | 1–62 | 2457.00 | 1.08 | 5.07 | 90.36 | MT-TE-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_40_67_+ | 40–67 | 3757.00 | 1.65 | 7.76 | 75.67 | MT-TE-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_39_69_+ | 39–69 | 1208.00 | 0.53 | 2.49 | 38.18 | MT-TE-201 | Mt tRNA | GM12878 (Cell line) |