ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385274.1 ENST00000385274.1_55_74_+ 55–74 383.00 46.03 0.79 71.99 MIR130A-201 miRNA GM12878 (Cell line)
ENST00000385274.1 ENST00000385274.1_55_77_+ 55–77 446.00 53.61 0.92 65.98 MIR130A-201 miRNA GM12878 (Cell line)
ENST00000385277.1 ENST00000385277.1_8_29_+ 8–29 238236.00 98.20 492.05 99.25 MIRLET7F2-201 miRNA GM12878 (Cell line)
ENST00000385278.3 ENST00000385278.3_61_82_+ 61–82 703.00 53.14 1.45 100.0 MIR652-201 miRNA GM12878 (Cell line)
ENST00000385282.3 ENST00000385282.3_63_84_+ 63–84 13197.00 65.44 27.26 100.0 MIR140-201 miRNA GM12878 (Cell line)
ENST00000385301.1 ENST00000385301.1_12_32_+ 12–32 4759.00 19.04 9.83 100.0 MIR106B-201 miRNA GM12878 (Cell line)
ENST00000385301.1 ENST00000385301.1_52_71_+ 52–71 5344.00 21.38 11.04 41.59 MIR106B-201 miRNA GM12878 (Cell line)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 38286.00 8.20 79.08 90.23 SNORD83A-201 snoRNA GM12878 (Cell line)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 416536.00 89.25 860.31 99.42 SNORD83A-201 snoRNA GM12878 (Cell line)
ENST00000386967.1 ENST00000386967.1_2_70_+ 2–70 453.00 72.02 0.94 100.0 SNORD41-201 snoRNA GM12878 (Cell line)
ENST00000387314.1 ENST00000387314.1_35_54_+ 35–54 1544.00 1.96 3.19 74.16 MT-TF-201 Mt tRNA GM12878 (Cell line)
ENST00000387314.1 ENST00000387314.1_1_54_+ 1–54 323.00 0.41 0.67 100.0 MT-TF-201 Mt tRNA GM12878 (Cell line)
ENST00000387314.1 ENST00000387314.1_41_56_+ 41–56 25244.00 32.06 52.14 66.78 MT-TF-201 Mt tRNA GM12878 (Cell line)
ENST00000387342.1 ENST00000387342.1_1_53_+ 1–53 1846.00 8.23 3.81 100.0 MT-TV-201 Mt tRNA GM12878 (Cell line)
ENST00000387347.2 ENST00000387347.2_1357_1376_+ 1357–1376 18832.00 13.24 38.90 100.0 MT-RNR2-201 Mt rRNA GM12878 (Cell line)
ENST00000387347.2 ENST00000387347.2_1500_1528_+ 1500–1528 5564.00 3.91 11.49 91.36 MT-RNR2-201 Mt rRNA GM12878 (Cell line)
ENST00000387347.2 ENST00000387347.2_1500_1559_+ 1500–1559 37.00 0.03 0.08 100.0 MT-RNR2-201 Mt rRNA GM12878 (Cell line)
ENST00000387347.2 ENST00000387347.2_1297_1329_+ 1297–1329 5474.00 3.85 11.31 100.0 MT-RNR2-201 Mt rRNA GM12878 (Cell line)
ENST00000387347.2 ENST00000387347.2_1500_1531_+ 1500–1531 3970.00 2.79 8.20 92.03 MT-RNR2-201 Mt rRNA GM12878 (Cell line)
ENST00000387347.2 ENST00000387347.2_74_96_+ 74–96 12.00 0.01 0.02 100.0 MT-RNR2-201 Mt rRNA GM12878 (Cell line)
ENST00000387347.2 ENST00000387347.2_1132_1147_+ 1132–1147 17842.00 12.55 36.85 100.0 MT-RNR2-201 Mt rRNA GM12878 (Cell line)
ENST00000387365.1 ENST00000387365.1_1_51_+ 1–51 5125.00 37.86 10.59 95.26 MT-TI-201 Mt tRNA GM12878 (Cell line)
ENST00000387365.1 ENST00000387365.1_1_58_+ 1–58 1313.00 9.70 2.71 100.0 MT-TI-201 Mt tRNA GM12878 (Cell line)
ENST00000387372.1 ENST00000387372.1_1_36_+ 1–36 16260.00 25.29 33.58 89.24 MT-TQ-201 Mt tRNA GM12878 (Cell line)
ENST00000387372.1 ENST00000387372.1_1_30_+ 1–30 8272.51 12.87 17.09 61.97 MT-TQ-201 Mt tRNA GM12878 (Cell line)