ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 178.00 12.47 0.45 100.0 HCN2-201 protein coding K562 (Cell line)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 134.00 1.52 0.34 100.0 ATP5MC3-201 protein coding K562 (Cell line)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 15653.00 97.83 39.73 100.0 CDC25A-201 protein coding K562 (Cell line)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 3.00 0.98 0.01 100.0 RUNX3-201 protein coding K562 (Cell line)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 992.00 81.31 2.52 100.0 BLOC1S4-201 protein coding K562 (Cell line)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 887.00 15.43 2.25 100.0 ATAD5-201 protein coding K562 (Cell line)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 2369.00 55.97 6.01 100.0 SLITRK5-201 protein coding K562 (Cell line)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 225.00 50.00 0.57 100.0 HASPIN-201 protein coding K562 (Cell line)
ENST00000327423.11 ENST00000327423.11_9327_9339_+ 9327–9339 459.00 10.94 1.16 100.0 PRR14L-201 protein coding K562 (Cell line)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 22933.00 98.92 58.20 100.0 ATG101-201 protein coding K562 (Cell line)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 321.00 70.09 0.81 100.0 PRICKLE1-201 protein coding K562 (Cell line)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 3.00 100.00 0.01 100.0 MIR133A2-201 miRNA K562 (Cell line)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 16036.00 32.88 40.70 100.0 PBLD-204 protein coding K562 (Cell line)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 7652.00 91.77 19.42 99.27 MIRLET7BHG-201 lncRNA K562 (Cell line)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 22.00 0.26 0.06 100.0 MIRLET7BHG-201 lncRNA K562 (Cell line)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 4.00 2.23 0.01 100.0 MIR375-201 miRNA K562 (Cell line)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 172.00 96.09 0.44 100.0 MIR375-201 miRNA K562 (Cell line)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 15407.00 7.64 39.10 100.0 MIR30E-201 miRNA K562 (Cell line)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 181061.00 89.81 459.51 100.0 MIR30E-201 miRNA K562 (Cell line)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 1574.00 65.18 3.99 100.0 MIR29A-201 miRNA K562 (Cell line)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 1651.00 89.00 4.19 100.0 MIR345-201 miRNA K562 (Cell line)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 167749.00 98.33 425.73 100.0 MIR16-2-201 miRNA K562 (Cell line)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 407.00 4.53 1.03 100.0 MIR340-201 miRNA K562 (Cell line)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 8189.00 91.18 20.78 100.0 MIR340-201 miRNA K562 (Cell line)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 6050.00 86.43 15.35 100.0 MIR107-201 miRNA K562 (Cell line)