ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 1370.00 6.43 3.48 100.0 ATP5MK-205 protein coding K562 (Cell line)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 8012.00 37.62 20.33 100.0 ATP5MK-205 protein coding K562 (Cell line)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 4664.00 29.86 11.84 100.0 LINC01556-201 lncRNA K562 (Cell line)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 7189.00 75.38 18.24 100.0 ATAD3A-202 protein coding K562 (Cell line)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 1637.00 54.90 4.15 73.51 TMC5-202 protein coding K562 (Cell line)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 2272.00 94.59 5.77 100.0 ZMYM2-203 protein coding K562 (Cell line)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 2027.00 8.23 5.14 100.0 RNVU1-7-201 snRNA K562 (Cell line)
ENST00000383884.1 ENST00000383884.1_1_75_+ 1–75 10897.00 84.83 27.66 100.0 SNORD24-201 snoRNA K562 (Cell line)
ENST00000383924.1 ENST00000383924.1_85_107_+ 85–107 6216.00 90.11 15.78 100.0 Y_RNA.389-201 misc RNA K562 (Cell line)
ENST00000384027.1 ENST00000384027.1_2_73_+ 2–73 50680.00 11.95 128.62 83.52 SNORD101-201 snoRNA K562 (Cell line)
ENST00000384027.1 ENST00000384027.1_3_70_+ 3–70 346354.00 81.66 879.01 97.59 SNORD101-201 snoRNA K562 (Cell line)
ENST00000384027.1 ENST00000384027.1_30_70_+ 30–70 1596.00 0.38 4.05 100.0 SNORD101-201 snoRNA K562 (Cell line)
ENST00000384027.1 ENST00000384027.1_42_70_+ 42–70 1016.00 0.24 2.58 100.0 SNORD101-201 snoRNA K562 (Cell line)
ENST00000384048.1 ENST00000384048.1_1_66_+ 1–66 165357.00 97.29 419.66 100.0 SNORD37-201 snoRNA K562 (Cell line)
ENST00000384304.1 ENST00000384304.1_2_72_+ 2–72 7545.00 55.00 19.15 92.26 SNORD59A-201 snoRNA K562 (Cell line)
ENST00000384360.1 ENST00000384360.1_1_47_+ 1–47 75.00 43.35 0.19 100.0 SNORA7B-201 snoRNA K562 (Cell line)
ENST00000384390.1 ENST00000384390.1_1_87_+ 1–87 120.00 39.87 0.30 100.0 SNORD14D-201 snoRNA K562 (Cell line)
ENST00000384673.1 ENST00000384673.1_82_107_+ 82–107 193.00 3.97 0.49 100.0 Y_RNA.555-201 misc RNA K562 (Cell line)
ENST00000384816.1 ENST00000384816.1_52_73_+ 52–73 204086.00 90.14 517.95 92.77 MIR25-201 miRNA K562 (Cell line)
ENST00000384819.1 ENST00000384819.1_7_28_+ 7–28 4416.00 71.76 11.21 98.13 MIR99B-201 miRNA K562 (Cell line)
ENST00000384832.1 ENST00000384832.1_58_78_+ 58–78 247.00 23.80 0.63 67.12 MIR23B-201 miRNA K562 (Cell line)
ENST00000384832.1 ENST00000384832.1_58_81_+ 58–81 675.00 65.03 1.71 88.82 MIR23B-201 miRNA K562 (Cell line)
ENST00000384836.1 ENST00000384836.1_66_87_+ 66–87 4.00 1.81 0.01 100.0 MIR203A-201 miRNA K562 (Cell line)
ENST00000384849.1 ENST00000384849.1_26_48_+ 26–48 1336.00 61.77 3.39 100.0 MIR199B-201 miRNA K562 (Cell line)
ENST00000384849.1 ENST00000384849.1_65_85_+ 65–85 705.00 32.59 1.79 92.52 MIR199B-201 miRNA K562 (Cell line)