ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_4_33_+ 4–33 140.00 0.17 0.36 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_16_32_+ 16–32 1759.00 2.08 4.46 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_52_+ 1–52 3701.00 4.37 9.39 77.31 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_41_+ 1–41 1078.00 1.27 2.74 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_31_53_+ 31–53 39391.00 32.04 99.97 100.0 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_3_32_+ 3–32 10827.00 8.81 27.48 70.61 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR16-3172048 tRNA-transcript-chr16-3172048_32_53_+ 32–53 39430.00 32.01 100.07 100.0 TRNA-TRANSCRIPT-CHR16-3172048 Pro tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_13_25_+ 13–25 10406.00 8.41 26.41 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_47_73_+ 47–73 76.00 0.06 0.19 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_13_+ 1–13 12224.00 9.88 31.02 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_34_+ 1–34 37277.00 30.11 94.61 93.29 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_41_+ 1–41 6406.00 5.18 16.26 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR16-3182635 tRNA-transcript-chr16-3182635_31_53_+ 31–53 14709.00 16.30 37.33 100.0 TRNA-TRANSCRIPT-CHR16-3182635 Pro tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR16-3191501 tRNA-transcript-chr16-3191501_1_33_+ 1–33 12706.00 16.80 32.25 85.14 TRNA-TRANSCRIPT-CHR16-3191501 Lys tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR16-3191989 tRNA-transcript-chr16-3191989_31_53_+ 31–53 6909.00 8.58 17.53 100.0 TRNA-TRANSCRIPT-CHR16-3191989 Pro tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_33_71_+ 33–71 28.00 0.82 0.07 80.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_35_+ 1–35 222.00 6.54 0.56 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_32_+ 1–32 25.00 0.74 0.06 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_52_+ 1–52 802.00 23.62 2.04 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR16-70789507 tRNA-transcript-chr16-70789507_1_48_+ 1–48 836.00 0.52 2.12 100.0 TRNA-TRANSCRIPT-CHR16-70789507 Gly tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR17-19860862 tRNA-transcript-chr17-19860862_1_32_+ 1–32 64.00 0.44 0.16 100.0 TRNA-TRANSCRIPT-CHR17-19860862 Gly tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_34_+ 1–34 903.00 5.41 2.29 86.33 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_13_+ 1–13 5715.00 34.25 14.50 100.0 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_32_+ 1–32 143.00 0.86 0.36 13.67 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_1_53_+ 1–53 4375.00 4.77 11.10 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA K562 (Cell line)