ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_32_53_+ 32–53 7924.00 8.63 20.11 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR17-68019897 tRNA-transcript-chr17-68019897_1_33_+ 1–33 20.00 0.73 0.05 100.0 TRNA-TRANSCRIPT-CHR17-68019897 Arg tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR17-75033906 tRNA-transcript-chr17-75033906_12_29_+ 12–29 41465.00 71.96 105.23 100.0 TRNA-TRANSCRIPT-CHR17-75033906 Arg tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR17-75035113 tRNA-transcript-chr17-75035113_1_33_+ 1–33 18.00 0.19 0.05 100.0 TRNA-TRANSCRIPT-CHR17-75035113 Arg tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_34_+ 1–34 8744.00 2.18 22.19 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_49_+ 1–49 3163.00 0.79 8.03 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_34_53_+ 34–53 19694.00 4.91 49.98 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_8_53_+ 8–53 8795.00 2.19 22.32 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_21_72_+ 21–72 65.00 0.02 0.16 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_17_54_+ 17–54 3171.00 0.79 8.05 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 229.00 0.14 0.58 53.88 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 1146.00 0.71 2.91 64.82 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 3971.00 2.47 10.08 95.66 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 1170.00 3.25 2.97 47.18 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 203.00 12.28 0.52 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 38.00 3.98 0.10 90.48 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 94.00 53.71 0.24 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 161.00 0.21 0.41 19.05 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 684.00 0.90 1.74 80.95 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 14664.00 19.23 37.22 79.81 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 1007.00 6.49 2.56 51.04 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 3284.05 21.16 8.33 74.23 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 1421.48 9.16 3.61 30.73 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 6245.00 22.88 15.85 90.98 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 17.00 0.02 0.04 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA K562 (Cell line)