ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 1047530.00 83.01 2658.52 100.0 SNHG32-223 lncRNA K562 (Cell line)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 164684.00 83.47 417.95 97.97 SNHG32-227 lncRNA K562 (Cell line)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 20304.00 10.29 51.53 100.0 SNHG32-227 lncRNA K562 (Cell line)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 323.00 0.16 0.82 100.0 SNHG32-227 lncRNA K562 (Cell line)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 569.00 0.29 1.44 100.0 SNHG32-227 lncRNA K562 (Cell line)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 28297.00 83.29 71.81 100.0 B4GALT1-203 nonsense mediated decay K562 (Cell line)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 175.00 1.62 0.44 100.0 ENST00000722183 lncRNA K562 (Cell line)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 5304.00 49.23 13.46 89.1 ENST00000722183 lncRNA K562 (Cell line)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 307.00 2.85 0.78 100.0 ENST00000722183 lncRNA K562 (Cell line)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 153.00 86.44 0.39 100.0 MIR34BHG-202 lncRNA K562 (Cell line)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 30487.00 72.78 77.37 81.14 THBS3-AS1-228 lncRNA K562 (Cell line)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 170.00 51.99 0.43 100.0 MIR200CHG-202 lncRNA K562 (Cell line)
ENST00000732834.1 ENST00000732834.1_1719_1741_+ 1719–1741 2.00 0.61 0.01 100.0 MIR200CHG-202 lncRNA K562 (Cell line)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 1925.00 27.48 4.89 100.0 SNHG16-266 lncRNA K562 (Cell line)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 1302.00 18.59 3.30 100.0 SNHG16-266 lncRNA K562 (Cell line)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 240.00 3.43 0.61 100.0 SNHG16-266 lncRNA K562 (Cell line)
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 70.00 1.00 0.18 100.0 SNHG16-266 lncRNA K562 (Cell line)
ENST00000741826.1 ENST00000741826.1_184_205_+ 184–205 19.00 47.50 0.05 100.0 MEG8-261 lncRNA K562 (Cell line)
ENST00000743202.1 ENST00000743202.1_560_577_+ 560–577 3310.00 30.94 8.40 100.0 NR2F2-AS1-327 lncRNA K562 (Cell line)
ENST00000747675.1 ENST00000747675.1_812_853_+ 812–853 18366.00 26.98 46.61 100.0 ENST00000747675 lncRNA K562 (Cell line)
ENST00000747675.1 ENST00000747675.1_802_853_+ 802–853 2766.00 4.06 7.02 42.04 ENST00000747675 lncRNA K562 (Cell line)
ENST00000747675.1 ENST00000747675.1_817_853_+ 817–853 19900.00 29.24 50.50 100.0 ENST00000747675 lncRNA K562 (Cell line)
ENST00000747675.1 ENST00000747675.1_800_853_+ 800–853 2013.00 2.96 5.11 42.12 ENST00000747675 lncRNA K562 (Cell line)
ENST00000747675.1 ENST00000747675.1_804_853_+ 804–853 1801.00 2.65 4.57 39.44 ENST00000747675 lncRNA K562 (Cell line)
ENST00000748458.1 ENST00000748458.1_161_188_+ 161–188 43088.00 47.19 109.35 78.23 SNHG26-250 lncRNA K562 (Cell line)