ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 70.00 0.13 0.18 100.0 ZBED9-AS1-201 lncRNA K562 (Cell line)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 4258.00 75.14 10.81 100.0 RPS3A-206 retained intron K562 (Cell line)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 32443.00 94.28 82.34 100.0 COX7C-203 protein coding K562 (Cell line)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 494.00 0.24 1.25 59.88 RACK1-229 protein coding K562 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 140379.36 67.83 356.27 71.96 RACK1-229 protein coding K562 (Cell line)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 9.00 0.00 0.02 100.0 RACK1-229 protein coding K562 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 53254.09 25.73 135.15 26.72 RACK1-229 protein coding K562 (Cell line)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 96137.00 10.40 243.99 55.34 RACK1-230 retained intron K562 (Cell line)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 793562.00 85.82 2013.98 92.18 RACK1-230 retained intron K562 (Cell line)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 10573.00 16.21 26.83 100.0 RNA5SP486-201 rRNA pseudogene K562 (Cell line)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 1118.00 84.95 2.84 100.0 SCARNA5-201 scaRNA K562 (Cell line)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 5256.00 2.76 13.34 100.0 RNY4-201 misc RNA K562 (Cell line)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 5193.00 2.73 13.18 64.42 RNY4-201 misc RNA K562 (Cell line)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 1147.00 0.60 2.91 100.0 RNY4-201 misc RNA K562 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 1827.00 0.96 4.64 100.0 RNY4-201 misc RNA K562 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 25152.00 13.20 63.83 94.62 RNY4-201 misc RNA K562 (Cell line)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 32808.00 17.22 83.26 97.61 RNY4-201 misc RNA K562 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 62.00 0.03 0.16 100.0 RNY4-201 misc RNA K562 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 5015.00 2.63 12.73 61.07 RNY4-201 misc RNA K562 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 8848.00 4.64 22.46 86.09 RNY4-201 misc RNA K562 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 871.00 0.46 2.21 100.0 RNY4-201 misc RNA K562 (Cell line)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 2679.00 1.41 6.80 87.55 RNY4-201 misc RNA K562 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 39458.00 20.71 100.14 100.0 RNY4-201 misc RNA K562 (Cell line)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 74.00 31.49 0.19 43.27 MIR3142HG-201 lncRNA K562 (Cell line)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 452.00 40.90 1.15 100.0 SNHG6-204 retained intron K562 (Cell line)