ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 90080.00 58.47 228.61 88.38 MIR151A-201 miRNA K562 (Cell line)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 49033.00 31.83 124.44 100.0 MIR151A-201 miRNA K562 (Cell line)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 27054.00 95.17 68.66 100.0 DENND3-221 protein coding K562 (Cell line)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 29.00 0.01 0.07 26.61 WDR74-204 protein coding K562 (Cell line)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 13.00 0.00 0.03 100.0 WDR74-204 protein coding K562 (Cell line)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 80.00 0.02 0.20 73.39 WDR74-204 protein coding K562 (Cell line)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 1295.00 0.28 3.29 77.82 WDR74-204 protein coding K562 (Cell line)
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 187.00 0.04 0.47 100.0 WDR74-204 protein coding K562 (Cell line)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 1054.00 0.23 2.67 100.0 WDR74-204 protein coding K562 (Cell line)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 81.00 0.02 0.21 100.0 WDR74-204 protein coding K562 (Cell line)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 194.00 0.04 0.49 82.2 WDR74-204 protein coding K562 (Cell line)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 2122.00 52.21 5.39 100.0 HSPA8-211 retained intron K562 (Cell line)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 159.00 1.96 0.40 100.0 SCARNA9-201 lncRNA K562 (Cell line)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 153303.00 94.83 389.07 100.0 TAF1D-215 retained intron K562 (Cell line)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 1479.00 0.91 3.75 100.0 TAF1D-215 retained intron K562 (Cell line)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 1150.00 45.80 2.92 100.0 HSPA8-215 retained intron K562 (Cell line)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 8.00 0.32 0.02 100.0 HSPA8-215 retained intron K562 (Cell line)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 72.00 2.87 0.18 100.0 HSPA8-215 retained intron K562 (Cell line)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 2707.00 33.58 6.87 100.0 RPS2-215 retained intron K562 (Cell line)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 516749.00 86.98 1311.45 87.91 ENST00000548801 lncRNA K562 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 652.00 9.81 1.65 100.0 ENST00000554988 lncRNA K562 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 2423.00 36.45 6.15 100.0 ENST00000554988 lncRNA K562 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 55.00 0.83 0.14 100.0 ENST00000554988 lncRNA K562 (Cell line)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 1.00 2.56 0.00 100.0 SNHG14-220 retained intron K562 (Cell line)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 2.00 5.13 0.01 100.0 SNHG14-220 retained intron K562 (Cell line)