ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 71803.00 96.52 182.23 99.42 SNORD105B-201 snoRNA K562 (Cell line)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 2776.00 69.73 7.05 98.51 SNORD121B-201 snoRNA K562 (Cell line)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 103.00 1.67 0.26 100.0 SNORD127-201 snoRNA K562 (Cell line)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 5378.00 87.09 13.65 99.56 SNORD127-201 snoRNA K562 (Cell line)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 8801.00 56.30 22.34 100.0 SNORD42B-201 snoRNA K562 (Cell line)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 10392.00 35.29 26.37 100.0 RNY4P25-201 misc RNA K562 (Cell line)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 128.00 41.03 0.32 100.0 SNORD121A-201 snoRNA K562 (Cell line)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 2188.00 32.27 5.55 70.65 SNORD126-201 snoRNA K562 (Cell line)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 3601.00 53.10 9.14 76.28 SNORD126-201 snoRNA K562 (Cell line)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 16460.00 84.52 41.77 89.66 SNORD124-201 snoRNA K562 (Cell line)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 177.00 3.67 0.45 100.0 SNHG12-201 retained intron K562 (Cell line)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 3722.00 41.52 9.45 92.45 RPL3-212 retained intron K562 (Cell line)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 1250.00 13.94 3.17 100.0 RPL3-212 retained intron K562 (Cell line)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 48881.00 97.56 124.05 100.0 SMC1A-204 retained intron K562 (Cell line)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 301192.00 90.39 764.39 99.75 RABGGTB-208 protein coding CDS not defined K562 (Cell line)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 93.00 3.74 0.24 82.3 DDX39B-219 retained intron K562 (Cell line)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 242.00 9.73 0.61 100.0 DDX39B-219 retained intron K562 (Cell line)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 480.00 19.29 1.22 100.0 DDX39B-219 retained intron K562 (Cell line)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 12707.00 76.21 32.25 100.0 RPS8-206 protein coding CDS not defined K562 (Cell line)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 312.00 1.08 0.79 100.0 RPL13-207 retained intron K562 (Cell line)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 27018.00 93.47 68.57 99.94 RPL13-207 retained intron K562 (Cell line)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 5358.00 0.34 13.60 89.18 EIF4A2-219 retained intron K562 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 3733.00 0.24 9.47 72.8 EIF4A2-219 retained intron K562 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 1837.00 0.12 4.66 31.68 EIF4A2-219 retained intron K562 (Cell line)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 1161.00 0.07 2.95 42.59 EIF4A2-219 retained intron K562 (Cell line)