ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 6755.00 4.31 17.14 100.0 SNORD12B-201 snoRNA K562 (Cell line)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 2850.00 1.82 7.23 100.0 SNORD12B-201 snoRNA K562 (Cell line)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 72.00 0.78 0.18 100.0 Y_RNA.609-201 misc RNA K562 (Cell line)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 1667.00 46.72 4.23 100.0 Y_RNA.612-201 misc RNA K562 (Cell line)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 86.00 2.55 0.22 100.0 SNORD71-201 snoRNA K562 (Cell line)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 2850.00 84.44 7.23 98.17 SNORD71-201 snoRNA K562 (Cell line)
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 91.00 2.70 0.23 100.0 SNORD71-201 snoRNA K562 (Cell line)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 16644.00 14.39 42.24 57.95 MIR194-2HG-201 lncRNA K562 (Cell line)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 96925.00 83.77 245.99 91.45 MIR194-2HG-201 lncRNA K562 (Cell line)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 3264.00 11.31 8.28 100.0 LINC01783-201 lncRNA K562 (Cell line)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 15614.00 99.30 39.63 100.0 RPS7P15-201 processed pseudogene K562 (Cell line)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 38.00 0.40 0.10 100.0 SNORD62B-201 snoRNA K562 (Cell line)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 369.00 3.86 0.94 100.0 SNORD62B-201 snoRNA K562 (Cell line)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 15.00 0.16 0.04 100.0 SNORD62B-201 snoRNA K562 (Cell line)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 719.00 7.52 1.82 100.0 SNORD62B-201 snoRNA K562 (Cell line)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 6816.00 71.31 17.30 96.42 SNORD62B-201 snoRNA K562 (Cell line)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 18250.00 96.87 46.32 100.0 MRPL32-203 nonsense mediated decay K562 (Cell line)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 5520.00 92.48 14.01 100.0 ENST00000436739 lncRNA K562 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 836.00 6.51 2.12 100.0 TMEM107-204 protein coding K562 (Cell line)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 1124.00 8.75 2.85 37.87 TMEM107-204 protein coding K562 (Cell line)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 1.00 0.01 0.00 100.0 TMEM107-204 protein coding K562 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 518.00 4.03 1.31 100.0 TMEM107-204 protein coding K562 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 10.00 0.08 0.03 18.52 TMEM107-204 protein coding K562 (Cell line)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 986.00 37.76 2.50 100.0 SNHG16-201 lncRNA K562 (Cell line)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 458.00 17.54 1.16 58.79 SNHG16-201 lncRNA K562 (Cell line)