ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000387456.1 ENST00000387456.1_1_31_+ 1–31 14798.00 51.47 37.56 100.0 MT-TL2-201 Mt tRNA K562 (Cell line)
ENST00000387459.1 ENST00000387459.1_1_62_+ 1–62 1415.00 1.18 3.59 77.24 MT-TE-201 Mt tRNA K562 (Cell line)
ENST00000387459.1 ENST00000387459.1_1_69_+ 1–69 83982.00 70.03 213.14 90.85 MT-TE-201 Mt tRNA K562 (Cell line)
ENST00000387459.1 ENST00000387459.1_40_67_+ 40–67 5.00 0.00 0.01 71.43 MT-TE-201 Mt tRNA K562 (Cell line)
ENST00000387459.1 ENST00000387459.1_39_69_+ 39–69 2.00 0.00 0.01 40.0 MT-TE-201 Mt tRNA K562 (Cell line)
ENST00000387459.1 ENST00000387459.1_1_57_+ 1–57 12450.00 10.38 31.60 100.0 MT-TE-201 Mt tRNA K562 (Cell line)
ENST00000388006.1 ENST00000388006.1_7_28_+ 7–28 260.00 56.28 0.66 100.0 MIR196A1-201 miRNA K562 (Cell line)
ENST00000389680.2 ENST00000389680.2_316_354_+ 316–354 2794.00 5.42 7.09 100.0 MT-RNR1-201 Mt rRNA K562 (Cell line)
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 983.00 48.64 2.49 100.0 MIR454-201 miRNA K562 (Cell line)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 73.00 25.09 0.19 100.0 MIR501-201 miRNA K562 (Cell line)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 13906.00 80.23 35.29 100.0 MIR769-201 miRNA K562 (Cell line)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 3713.00 68.02 9.42 100.0 KRTAP19-1-201 protein coding K562 (Cell line)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 16.00 88.89 0.04 100.0 MIR509-3-201 miRNA K562 (Cell line)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 24833.00 94.14 63.02 100.0 MIR301B-201 miRNA K562 (Cell line)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 6815.00 55.00 17.30 77.08 RNU1-82P-201 snRNA K562 (Cell line)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 1504.00 23.29 3.82 100.0 SNORD66-201 snoRNA K562 (Cell line)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 803.00 12.44 2.04 66.86 SNORD66-201 snoRNA K562 (Cell line)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 40.00 0.62 0.10 100.0 SNORD66-201 snoRNA K562 (Cell line)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 290.00 4.49 0.74 100.0 SNORD66-201 snoRNA K562 (Cell line)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 1140.00 71.92 2.89 100.0 U3.17-201 snoRNA K562 (Cell line)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 2280.00 69.49 5.79 100.0 SNORD17-201 snoRNA K562 (Cell line)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 2274.00 17.23 5.77 100.0 SNORD72-201 snoRNA K562 (Cell line)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 214.00 32.82 0.54 100.0 SNORD70B-201 snoRNA K562 (Cell line)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 4773.00 22.27 12.11 84.33 RNY4P18-201 misc RNA K562 (Cell line)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 5022.00 49.75 12.75 84.7 SNORD90-201 snoRNA K562 (Cell line)