ENCFF001REL

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 675.00 47.54 1.25 100.0 HCN2-201 protein coding K562 (Cell line)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 160.00 5.35 0.30 100.0 ATP5MC3-201 protein coding K562 (Cell line)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 8486.00 97.67 15.78 100.0 CDC25A-201 protein coding K562 (Cell line)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 7.00 3.50 0.01 100.0 RUNX3-201 protein coding K562 (Cell line)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 441.00 85.47 0.82 100.0 BLOC1S4-201 protein coding K562 (Cell line)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 371.00 17.91 0.69 100.0 ATAD5-201 protein coding K562 (Cell line)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 857.00 43.93 1.59 100.0 SLITRK5-201 protein coding K562 (Cell line)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 86.00 46.49 0.16 100.0 HASPIN-201 protein coding K562 (Cell line)
ENST00000327423.11 ENST00000327423.11_9327_9339_+ 9327–9339 161.00 10.83 0.30 100.0 PRR14L-201 protein coding K562 (Cell line)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 9696.00 99.01 18.02 100.0 ATG101-201 protein coding K562 (Cell line)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 133.00 71.12 0.25 100.0 PRICKLE1-201 protein coding K562 (Cell line)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 4.00 100.00 0.01 100.0 MIR133A2-201 miRNA K562 (Cell line)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 4155.00 28.11 7.72 100.0 PBLD-204 protein coding K562 (Cell line)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 7902.00 95.55 14.69 99.32 MIRLET7BHG-201 lncRNA K562 (Cell line)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 36.00 0.44 0.07 94.74 MIRLET7BHG-201 lncRNA K562 (Cell line)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 4.00 2.06 0.01 100.0 MIR375-201 miRNA K562 (Cell line)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 186.00 95.88 0.35 100.0 MIR375-201 miRNA K562 (Cell line)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 8913.00 10.23 16.57 100.0 MIR30E-201 miRNA K562 (Cell line)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 76090.00 87.31 141.45 100.0 MIR30E-201 miRNA K562 (Cell line)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 614.00 61.22 1.14 100.0 MIR29A-201 miRNA K562 (Cell line)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 927.00 88.12 1.72 100.0 MIR345-201 miRNA K562 (Cell line)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 93469.00 98.42 173.75 100.0 MIR16-2-201 miRNA K562 (Cell line)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 223.00 7.11 0.41 100.0 MIR340-201 miRNA K562 (Cell line)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 2735.00 87.24 5.08 100.0 MIR340-201 miRNA K562 (Cell line)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 3317.00 84.92 6.17 100.0 MIR107-201 miRNA K562 (Cell line)