ENCFF001REL

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 3199.00 12.13 5.95 100.0 ENST00000707189 TEC K562 (Cell line)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 5833.00 0.27 10.84 100.0 MIR17HG-214 lncRNA K562 (Cell line)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 10977.00 0.50 20.41 100.0 MIR17HG-214 lncRNA K562 (Cell line)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 766972.85 34.99 1425.77 42.08 MIR17HG-214 lncRNA K562 (Cell line)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 34797.00 1.59 64.69 100.0 MIR17HG-214 lncRNA K562 (Cell line)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 1134695.04 51.77 2109.34 58.62 MIR17HG-214 lncRNA K562 (Cell line)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 59156.00 2.70 109.97 100.0 MIR17HG-214 lncRNA K562 (Cell line)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 6001.00 0.27 11.16 100.0 MIR17HG-214 lncRNA K562 (Cell line)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 16583.00 0.76 30.83 100.0 MIR17HG-214 lncRNA K562 (Cell line)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 25228.00 1.15 46.90 100.0 MIR17HG-214 lncRNA K562 (Cell line)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 109426.00 4.58 203.42 100.0 SNHG32-223 lncRNA K562 (Cell line)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 2320.00 0.10 4.31 100.0 SNHG32-223 lncRNA K562 (Cell line)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 1785.00 0.07 3.32 100.0 SNHG32-223 lncRNA K562 (Cell line)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 56275.00 2.36 104.61 93.3 SNHG32-223 lncRNA K562 (Cell line)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 2194564.00 91.86 4079.59 100.0 SNHG32-223 lncRNA K562 (Cell line)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 334979.00 90.48 622.71 96.7 SNHG32-227 lncRNA K562 (Cell line)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 8077.00 2.18 15.01 100.0 SNHG32-227 lncRNA K562 (Cell line)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 747.00 0.20 1.39 100.0 SNHG32-227 lncRNA K562 (Cell line)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 1529.00 0.41 2.84 100.0 SNHG32-227 lncRNA K562 (Cell line)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 8933.00 82.05 16.61 100.0 B4GALT1-203 nonsense mediated decay K562 (Cell line)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 136.00 2.55 0.25 100.0 ENST00000722183 lncRNA K562 (Cell line)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 2100.00 39.35 3.90 86.14 ENST00000722183 lncRNA K562 (Cell line)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 350.00 6.56 0.65 100.0 ENST00000722183 lncRNA K562 (Cell line)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 64.00 78.05 0.12 100.0 MIR34BHG-202 lncRNA K562 (Cell line)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 34407.00 75.09 63.96 82.39 THBS3-AS1-228 lncRNA K562 (Cell line)