ENCFF001REL

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 2123.00 71.03 3.95 100.0 FMN2-209 protein coding CDS not defined K562 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 1026.00 1.10 1.91 100.0 LINC02739-203 lncRNA K562 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 955.00 1.03 1.78 22.58 LINC02739-203 lncRNA K562 (Cell line)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 18119.00 19.45 33.68 100.0 LINC02739-203 lncRNA K562 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 3274.00 3.51 6.09 77.42 LINC02739-203 lncRNA K562 (Cell line)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 36869.00 39.58 68.54 100.0 LINC02739-203 lncRNA K562 (Cell line)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 16.00 0.02 0.03 100.0 LINC02739-203 lncRNA K562 (Cell line)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 1.00 6.67 0.00 100.0 MIR124-1HG-216 lncRNA K562 (Cell line)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 182.00 20.73 0.34 100.0 SNHG10-212 lncRNA K562 (Cell line)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 12.25 0.00 0.02 72.05 SNHG19-202 lncRNA K562 (Cell line)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 320972.33 90.04 596.67 94.14 SNHG19-202 lncRNA K562 (Cell line)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 20106.05 5.64 37.38 14.99 SNHG19-202 lncRNA K562 (Cell line)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 4.66 0.00 0.01 25.9 SNHG19-202 lncRNA K562 (Cell line)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 2835.00 54.86 5.27 100.0 MIR222HG-206 lncRNA K562 (Cell line)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 1180.00 22.83 2.19 80.38 MIR222HG-206 lncRNA K562 (Cell line)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 311.00 6.02 0.58 100.0 MIR222HG-206 lncRNA K562 (Cell line)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 45.00 3.49 0.08 100.0 RPSA-216 retained intron K562 (Cell line)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 26.00 35.62 0.05 100.0 MIR99AHG-370 lncRNA K562 (Cell line)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 33.00 45.21 0.06 100.0 MIR99AHG-370 lncRNA K562 (Cell line)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 15638.00 97.79 29.07 100.0 HPS4-237 retained intron K562 (Cell line)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 114.00 77.55 0.21 100.0 MEG8-253 lncRNA K562 (Cell line)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 8.00 12.12 0.01 100.0 MEG9-206 lncRNA K562 (Cell line)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 6.00 9.09 0.01 100.0 MEG9-206 lncRNA K562 (Cell line)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 14.00 21.21 0.03 100.0 MEG9-206 lncRNA K562 (Cell line)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 11223.00 12.34 20.86 100.0 DNAJC5-203 nonsense mediated decay K562 (Cell line)