ENCFF001REL

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 717.00 0.02 1.33 59.7 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 550.00 0.02 1.02 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 221.00 0.01 0.41 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 3348.00 0.11 6.22 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 37.00 30.08 0.07 100.0 SNHG14-315 lncRNA K562 (Cell line)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 28.00 22.76 0.05 100.0 SNHG14-315 lncRNA K562 (Cell line)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 45.00 36.59 0.08 95.74 SNHG14-315 lncRNA K562 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 1095.00 0.16 2.04 100.0 SNHG5-273 lncRNA K562 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 84936.36 12.51 157.89 22.32 SNHG5-273 lncRNA K562 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 244.00 0.04 0.45 100.0 SNHG5-273 lncRNA K562 (Cell line)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 255.00 0.04 0.47 100.0 SNHG5-273 lncRNA K562 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 410044.83 60.40 762.25 82.19 SNHG5-273 lncRNA K562 (Cell line)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 1521.00 0.22 2.83 59.44 SNHG5-273 lncRNA K562 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 253.00 0.04 0.47 100.0 SNHG5-273 lncRNA K562 (Cell line)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 27052.00 3.98 50.29 100.0 SNHG5-273 lncRNA K562 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 321.00 0.05 0.60 100.0 SNHG5-273 lncRNA K562 (Cell line)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 2.00 0.00 0.00 100.0 SNHG5-273 lncRNA K562 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 118657.00 17.48 220.58 93.5 SNHG5-273 lncRNA K562 (Cell line)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 1.00 0.89 0.00 50.0 SNHG14-323 lncRNA K562 (Cell line)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 2.00 0.16 0.00 100.0 MEG8-251 lncRNA K562 (Cell line)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 689.00 55.83 1.28 78.38 MEG8-251 lncRNA K562 (Cell line)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 58.00 4.70 0.11 47.15 MEG8-251 lncRNA K562 (Cell line)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 11.00 37.93 0.02 68.75 SNHG14-336 lncRNA K562 (Cell line)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 17.00 58.62 0.03 65.38 SNHG14-336 lncRNA K562 (Cell line)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 19.00 70.37 0.04 100.0 SNHG14-341 lncRNA K562 (Cell line)