ENCFF001REL

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 1508.00 0.05 2.80 91.28 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 485492.00 15.88 902.51 96.78 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 264.00 0.01 0.49 52.28 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 188818.00 6.18 351.00 99.84 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 7747.00 0.25 14.40 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 599163.00 19.60 1113.81 98.11 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 752.00 0.02 1.40 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 925.00 0.03 1.72 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 3047.00 0.10 5.66 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 2577.00 0.08 4.79 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 379.00 0.01 0.70 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 49.00 0.00 0.09 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 121846.00 3.99 226.51 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 5803.00 0.19 10.79 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 436.00 0.01 0.81 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 1158430.00 37.90 2153.46 98.63 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 574.00 0.02 1.07 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 105112.00 3.44 195.40 93.02 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 1878.00 0.06 3.49 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 148.00 0.00 0.28 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 11.00 0.00 0.02 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 101617.00 3.32 188.90 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 1535.00 0.05 2.85 87.32 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 284.59 0.01 0.53 46.88 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 173.00 0.01 0.32 100.0 SNHG1-248 lncRNA K562 (Cell line)