ENCFF001REL

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 12.00 0.00 0.02 100.0 C19orf48P-203 retained intron K562 (Cell line)
ENST00000597420.2 ENST00000597420.2_241_263_+ 241–263 257.00 81.85 0.48 100.0 ENST00000597420 lncRNA K562 (Cell line)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 1332.00 40.83 2.48 100.0 RPS11-206 retained intron K562 (Cell line)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 1245.00 38.17 2.31 100.0 RPS11-206 retained intron K562 (Cell line)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 147.00 47.88 0.27 50.34 CARMN-209 lncRNA K562 (Cell line)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 1279.00 22.43 2.38 100.0 ENST00000602478 lncRNA K562 (Cell line)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 4.00 6.45 0.01 100.0 PPFIA1P1-201 processed pseudogene K562 (Cell line)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 123.00 51.46 0.23 100.0 SNORD114-21-201 snoRNA K562 (Cell line)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 5.00 2.09 0.01 100.0 SNORD114-21-201 snoRNA K562 (Cell line)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 1.00 14.29 0.00 100.0 SNORD115-40-201 snoRNA K562 (Cell line)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 159.00 98.15 0.30 100.0 MIR98-201 miRNA K562 (Cell line)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 204.00 81.93 0.38 100.0 SNORD113-5-201 snoRNA K562 (Cell line)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 1232.00 92.63 2.29 100.0 MIR15A-201 miRNA K562 (Cell line)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 5.00 62.50 0.01 100.0 MIR376C-201 miRNA K562 (Cell line)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 458.00 36.41 0.85 100.0 SNHG21-206 retained intron K562 (Cell line)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 912.00 61.29 1.70 100.0 SNORD11B-201 snoRNA K562 (Cell line)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 2647.00 73.90 4.92 100.0 SNORD91B-201 snoRNA K562 (Cell line)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 19488.00 79.00 36.23 95.11 SNORD91A-201 snoRNA K562 (Cell line)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 377500.00 45.47 701.75 95.98 MIR486-1-201 miRNA K562 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 2820.00 2.99 5.24 20.89 NOP56-219 retained intron K562 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 6474.00 6.87 12.03 100.0 NOP56-219 retained intron K562 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 7487.00 7.95 13.92 100.0 NOP56-219 retained intron K562 (Cell line)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 53283.00 56.58 99.05 99.38 NOP56-219 retained intron K562 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 3145.00 8.43 5.85 69.46 RNA5-8SN2-201 rRNA K562 (Cell line)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 76.34 0.20 0.14 64.7 RNA5-8SN2-201 rRNA K562 (Cell line)