ENCFF001REL

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 14707.33 21.02 27.34 34.07 RPL17-214 retained intron K562 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 33812.34 48.34 62.86 66.58 RPL17-214 retained intron K562 (Cell line)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 1090.00 0.04 2.03 100.0 SNORD43-201 snoRNA K562 (Cell line)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 2412000.00 98.51 4483.79 99.24 SNORD43-201 snoRNA K562 (Cell line)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 1240.00 0.05 2.31 100.0 SNORD43-201 snoRNA K562 (Cell line)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 436.00 76.90 0.81 100.0 MIR151B-201 miRNA K562 (Cell line)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 660.00 1.59 1.23 100.0 SNORD3A-201 snoRNA K562 (Cell line)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 9486.00 78.23 17.63 100.0 SNORD92-201 snoRNA K562 (Cell line)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 24965.00 54.64 46.41 100.0 NSRP1-214 protein coding K562 (Cell line)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 14534.00 31.81 27.02 87.44 NSRP1-214 protein coding K562 (Cell line)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 1064.00 9.66 1.98 100.0 MIR23AHG-201 lncRNA K562 (Cell line)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 870.00 7.90 1.62 70.45 MIR23AHG-201 lncRNA K562 (Cell line)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 4793.00 43.53 8.91 93.89 MIR23AHG-201 lncRNA K562 (Cell line)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 490.00 4.45 0.91 87.19 MIR23AHG-201 lncRNA K562 (Cell line)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 330.00 3.00 0.61 72.37 MIR23AHG-201 lncRNA K562 (Cell line)
ENST00000590797.5 ENST00000590797.5_2254_2275_+ 2254–2275 1.00 10.00 0.00 100.0 MIR122HG-201 lncRNA K562 (Cell line)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 109.00 41.44 0.20 100.0 ODAD3-204 nonsense mediated decay K562 (Cell line)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 35189.00 9.24 65.41 100.0 VMP1-217 retained intron K562 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 2373.00 0.62 4.41 100.0 VMP1-217 retained intron K562 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 276919.00 72.70 514.78 83.21 VMP1-217 retained intron K562 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 3358.00 0.11 6.24 100.0 C19orf48P-203 retained intron K562 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 1013566.54 33.07 1884.17 38.78 C19orf48P-203 retained intron K562 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 1966790.82 64.17 3656.17 66.19 C19orf48P-203 retained intron K562 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 53344.00 1.74 99.16 90.65 C19orf48P-203 retained intron K562 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 4429.00 0.14 8.23 100.0 C19orf48P-203 retained intron K562 (Cell line)