ENCFF001REL

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 3.00 5.36 0.01 100.0 SNHG14-220 retained intron K562 (Cell line)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 3.00 5.36 0.01 100.0 SNHG14-220 retained intron K562 (Cell line)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 23.00 41.07 0.04 100.0 SNHG14-220 retained intron K562 (Cell line)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 8174.00 99.68 15.20 100.0 TEKT4P2-201 transcribed unprocessed pseudogene K562 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 5965.00 2.45 11.09 100.0 RPL4-202 retained intron K562 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 73.00 0.03 0.14 100.0 RPL4-202 retained intron K562 (Cell line)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 977.00 0.40 1.82 100.0 RPL4-202 retained intron K562 (Cell line)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 3955.00 1.62 7.35 100.0 RPL4-202 retained intron K562 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 212158.00 87.02 394.39 98.21 RPL4-202 retained intron K562 (Cell line)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 4659.00 8.30 8.66 100.0 ENST00000563103 lncRNA K562 (Cell line)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 468.00 0.78 0.87 100.0 RPL4-207 retained intron K562 (Cell line)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 45456.00 75.85 84.50 100.0 RPL4-207 retained intron K562 (Cell line)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 34849.00 53.95 64.78 92.43 ENST00000565336 lncRNA K562 (Cell line)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 18532.00 28.69 34.45 87.8 ENST00000565336 lncRNA K562 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 3299.00 1.88 6.13 100.0 RBMX-210 retained intron K562 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 1317.00 0.75 2.45 100.0 RBMX-210 retained intron K562 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 158158.00 89.89 294.01 99.48 RBMX-210 retained intron K562 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 867.00 0.49 1.61 100.0 RBMX-210 retained intron K562 (Cell line)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 506.00 3.17 0.94 100.0 RPL4-214 retained intron K562 (Cell line)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 10477.00 65.72 19.48 100.0 RPL4-214 retained intron K562 (Cell line)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 462.00 1.28 0.86 100.0 POLG-DT-202 lncRNA K562 (Cell line)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 13254.70 36.78 24.64 64.98 POLG-DT-202 lncRNA K562 (Cell line)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 10377.77 28.80 19.29 49.14 POLG-DT-202 lncRNA K562 (Cell line)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 2735.00 8.70 5.08 100.0 ENST00000570843 lncRNA K562 (Cell line)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 69.00 28.28 0.13 100.0 MIR497HG-207 lncRNA K562 (Cell line)