ENCFF001REL

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 180468.00 99.48 335.48 99.73 MIR22HG-212 lncRNA K562 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 76.00 0.14 0.14 9.63 SNORD53B-201 snoRNA K562 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 28400.00 51.22 52.79 52.93 SNORD53B-201 snoRNA K562 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 713.00 1.29 1.33 90.37 SNORD53B-201 snoRNA K562 (Cell line)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 1514.00 92.15 2.81 100.0 ENST00000578036 lncRNA K562 (Cell line)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 29515.00 89.98 54.87 100.0 RPL23A-207 protein coding K562 (Cell line)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 2329.00 91.23 4.33 100.0 MIR744-201 miRNA K562 (Cell line)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 4626.00 81.34 8.60 100.0 MIR378C-201 miRNA K562 (Cell line)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 7588.00 8.59 14.11 12.29 MIR142HG-201 lncRNA K562 (Cell line)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 1448.00 1.64 2.69 100.0 MIR142HG-201 lncRNA K562 (Cell line)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 15170.00 17.18 28.20 20.39 MIR142HG-201 lncRNA K562 (Cell line)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 899.00 2.25 1.67 100.0 SNORD3C-201 snoRNA K562 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 2762.63 0.38 5.14 52.72 RPL23A-208 retained intron K562 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 2560.32 0.35 4.76 59.09 RPL23A-208 retained intron K562 (Cell line)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 235085.00 32.08 437.01 56.0 RPL23A-208 retained intron K562 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 481778.00 65.75 895.60 93.58 RPL23A-208 retained intron K562 (Cell line)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 696.00 0.11 1.29 12.4 RPL17-211 retained intron K562 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 1131.00 0.18 2.10 2.73 RPL17-211 retained intron K562 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 8659.00 1.36 16.10 100.0 RPL17-211 retained intron K562 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 522909.00 82.41 972.06 99.84 RPL17-211 retained intron K562 (Cell line)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 76572.00 12.07 142.34 99.6 RPL17-211 retained intron K562 (Cell line)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 3957.00 30.91 7.36 91.72 ENST00000582320 lncRNA K562 (Cell line)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 5570.00 43.51 10.35 100.0 ENST00000582320 lncRNA K562 (Cell line)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 1624.00 12.68 3.02 100.0 ENST00000582320 lncRNA K562 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 13308.00 19.02 24.74 100.0 RPL17-214 retained intron K562 (Cell line)