ENCFF001REL

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385255.3 ENST00000385255.3_23_46_+ 23–46 274630.86 66.92 510.53 70.59 MIR182-201 miRNA K562 (Cell line)
ENST00000385259.1 ENST00000385259.1_13_34_+ 13–34 46.00 92.00 0.09 95.83 MIR100-201 miRNA K562 (Cell line)
ENST00000385261.1 ENST00000385261.1_51_73_+ 51–73 5545.00 92.19 10.31 100.0 MIR301A-201 miRNA K562 (Cell line)
ENST00000385274.1 ENST00000385274.1_55_74_+ 55–74 11.00 64.71 0.02 91.67 MIR130A-201 miRNA K562 (Cell line)
ENST00000385274.1 ENST00000385274.1_55_77_+ 55–77 5.00 29.41 0.01 83.33 MIR130A-201 miRNA K562 (Cell line)
ENST00000385277.1 ENST00000385277.1_8_29_+ 8–29 6112.00 97.57 11.36 99.37 MIRLET7F2-201 miRNA K562 (Cell line)
ENST00000385278.3 ENST00000385278.3_61_82_+ 61–82 1480.00 55.41 2.75 100.0 MIR652-201 miRNA K562 (Cell line)
ENST00000385279.1 ENST00000385279.1_16_37_+ 16–37 50.00 96.15 0.09 100.0 MIR653-201 miRNA K562 (Cell line)
ENST00000385282.3 ENST00000385282.3_63_84_+ 63–84 6443.00 72.17 11.98 100.0 MIR140-201 miRNA K562 (Cell line)
ENST00000385301.1 ENST00000385301.1_12_32_+ 12–32 1664.00 23.58 3.09 100.0 MIR106B-201 miRNA K562 (Cell line)
ENST00000385301.1 ENST00000385301.1_52_71_+ 52–71 841.00 11.92 1.56 36.64 MIR106B-201 miRNA K562 (Cell line)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 52440.00 11.31 97.48 92.23 SNORD83A-201 snoRNA K562 (Cell line)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 397099.00 85.68 738.19 99.12 SNORD83A-201 snoRNA K562 (Cell line)
ENST00000386967.1 ENST00000386967.1_2_70_+ 2–70 4317.00 87.14 8.03 100.0 SNORD41-201 snoRNA K562 (Cell line)
ENST00000387314.1 ENST00000387314.1_41_56_+ 41–56 665.00 2.00 1.24 31.68 MT-TF-201 Mt tRNA K562 (Cell line)
ENST00000387314.1 ENST00000387314.1_1_54_+ 1–54 232.00 0.70 0.43 100.0 MT-TF-201 Mt tRNA K562 (Cell line)
ENST00000387314.1 ENST00000387314.1_35_54_+ 35–54 1419.00 4.27 2.64 58.28 MT-TF-201 Mt tRNA K562 (Cell line)
ENST00000387342.1 ENST00000387342.1_1_53_+ 1–53 1609.00 7.07 2.99 100.0 MT-TV-201 Mt tRNA K562 (Cell line)
ENST00000387347.2 ENST00000387347.2_1500_1531_+ 1500–1531 1441.00 1.06 2.68 90.52 MT-RNR2-201 Mt rRNA K562 (Cell line)
ENST00000387347.2 ENST00000387347.2_74_96_+ 74–96 5.00 0.00 0.01 100.0 MT-RNR2-201 Mt rRNA K562 (Cell line)
ENST00000387347.2 ENST00000387347.2_1132_1147_+ 1132–1147 11116.00 8.16 20.66 100.0 MT-RNR2-201 Mt rRNA K562 (Cell line)
ENST00000387347.2 ENST00000387347.2_1357_1376_+ 1357–1376 19246.00 14.13 35.78 100.0 MT-RNR2-201 Mt rRNA K562 (Cell line)
ENST00000387347.2 ENST00000387347.2_1500_1528_+ 1500–1528 957.00 0.70 1.78 81.86 MT-RNR2-201 Mt rRNA K562 (Cell line)
ENST00000387347.2 ENST00000387347.2_1500_1559_+ 1500–1559 80.00 0.06 0.15 100.0 MT-RNR2-201 Mt rRNA K562 (Cell line)
ENST00000387347.2 ENST00000387347.2_1297_1329_+ 1297–1329 2284.00 1.68 4.25 100.0 MT-RNR2-201 Mt rRNA K562 (Cell line)