ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 675.00 20.05 1.74 100.0 HCN2-201 protein coding GM12878 (Cell line)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 198.00 0.55 0.51 100.0 ATP5MC3-201 protein coding GM12878 (Cell line)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 40435.00 98.40 104.28 100.0 CDC25A-201 protein coding GM12878 (Cell line)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 4.00 0.49 0.01 100.0 RUNX3-201 protein coding GM12878 (Cell line)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 1411.00 68.53 3.64 100.0 BLOC1S4-201 protein coding GM12878 (Cell line)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 4448.00 26.93 11.47 100.0 ATAD5-201 protein coding GM12878 (Cell line)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 4650.00 28.09 11.99 100.0 SLITRK5-201 protein coding GM12878 (Cell line)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 1023.00 47.94 2.64 100.0 HASPIN-201 protein coding GM12878 (Cell line)
ENST00000327423.11 ENST00000327423.11_9327_9339_+ 9327–9339 8203.00 56.26 21.15 100.0 PRR14L-201 protein coding GM12878 (Cell line)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 5043.00 95.95 13.01 100.0 ATG101-201 protein coding GM12878 (Cell line)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 579.00 68.76 1.49 100.0 PRICKLE1-201 protein coding GM12878 (Cell line)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 19.00 73.08 0.05 100.0 MIR133A2-201 miRNA GM12878 (Cell line)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 8008.00 40.31 20.65 100.0 PBLD-204 protein coding GM12878 (Cell line)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 49058.00 92.28 126.51 98.69 MIRLET7BHG-201 lncRNA GM12878 (Cell line)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 559.00 1.05 1.44 89.87 MIRLET7BHG-201 lncRNA GM12878 (Cell line)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 24.00 88.89 0.06 100.0 MIR375-201 miRNA GM12878 (Cell line)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 32673.00 4.04 84.26 100.0 MIR30E-201 miRNA GM12878 (Cell line)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 754414.00 93.22 1945.53 100.0 MIR30E-201 miRNA GM12878 (Cell line)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 37967.00 65.45 97.91 100.0 MIR29A-201 miRNA GM12878 (Cell line)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 9321.00 89.97 24.04 100.0 MIR345-201 miRNA GM12878 (Cell line)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 954760.00 98.76 2462.20 100.0 MIR16-2-201 miRNA GM12878 (Cell line)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 26.00 86.67 0.07 100.0 MIR340-201 miRNA GM12878 (Cell line)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 23790.00 76.34 61.35 100.0 MIR107-201 miRNA GM12878 (Cell line)
ENST00000362150.3 ENST00000362150.3_49_70_+ 49–70 4.00 26.67 0.01 50.0 MIR381-201 miRNA GM12878 (Cell line)
ENST00000362154.1 ENST00000362154.1_48_70_+ 48–70 111089.00 81.91 286.48 88.89 MIR103A2-201 miRNA GM12878 (Cell line)