ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362155.4 ENST00000362155.4_44_64_+ 44–64 18.00 90.00 0.05 100.0 MIR369-201 miRNA GM12878 (Cell line)
ENST00000362162.1 ENST00000362162.1_14_38_+ 14–38 9975.00 32.07 25.72 100.0 MIR425-201 miRNA GM12878 (Cell line)
ENST00000362162.1 ENST00000362162.1_14_35_+ 14–35 9008.00 28.96 23.23 100.0 MIR425-201 miRNA GM12878 (Cell line)
ENST00000362168.1 ENST00000362168.1_66_87_+ 66–87 11659.00 56.16 30.07 100.0 MIR210-201 miRNA GM12878 (Cell line)
ENST00000362177.3 ENST00000362177.3_43_64_+ 43–64 239062.00 95.68 616.51 97.39 MIR378A-201 miRNA GM12878 (Cell line)
ENST00000362181.3 ENST00000362181.3_6_27_+ 6–27 2100.00 37.13 5.42 100.0 MIR361-201 miRNA GM12878 (Cell line)
ENST00000362195.3 ENST00000362195.3_49_70_+ 49–70 53258.00 82.04 137.35 88.14 MIR101-2-201 miRNA GM12878 (Cell line)
ENST00000362195.3 ENST00000362195.3_48_66_+ 48–66 1979.00 3.05 5.10 21.63 MIR101-2-201 miRNA GM12878 (Cell line)
ENST00000362205.1 ENST00000362205.1_10_31_+ 10–31 501542.00 98.16 1293.41 99.12 MIR26A1-201 miRNA GM12878 (Cell line)
ENST00000362207.3 ENST00000362207.3_15_35_+ 15–35 2.00 33.33 0.01 100.0 MIR129-2-201 miRNA GM12878 (Cell line)
ENST00000362212.1 ENST00000362212.1_61_83_+ 61–83 3048.00 68.87 7.86 100.0 MIR342-201 miRNA GM12878 (Cell line)
ENST00000362215.3 ENST00000362215.3_6_27_+ 6–27 6768.00 0.85 17.45 100.0 MIR148A-201 miRNA GM12878 (Cell line)
ENST00000362215.3 ENST00000362215.3_44_65_+ 44–65 736079.00 92.84 1898.25 94.83 MIR148A-201 miRNA GM12878 (Cell line)
ENST00000362222.4 ENST00000362222.4_50_70_+ 50–70 28.00 100.00 0.07 100.0 MIR410-201 miRNA GM12878 (Cell line)
ENST00000362237.3 ENST00000362237.3_47_68_+ 47–68 1.00 25.00 0.00 100.0 MIR409-201 miRNA GM12878 (Cell line)
ENST00000362239.4 ENST00000362239.4_16_36_+ 16–36 25.00 92.59 0.06 100.0 MIR411-201 miRNA GM12878 (Cell line)
ENST00000362251.4 ENST00000362251.4_12_33_+ 12–33 47993.00 93.72 123.77 97.67 MIR26B-201 miRNA GM12878 (Cell line)
ENST00000362252.3 ENST00000362252.3_63_86_+ 63–86 37098.00 80.32 95.67 90.42 MIR148B-201 miRNA GM12878 (Cell line)
ENST00000362280.3 ENST00000362280.3_5_26_+ 5–26 65705.00 96.74 169.44 99.37 MIRLET7G-201 miRNA GM12878 (Cell line)
ENST00000362283.1 ENST00000362283.1_6_25_+ 6–25 592.00 3.10 1.53 52.72 MIR30D-201 miRNA GM12878 (Cell line)
ENST00000362283.1 ENST00000362283.1_6_21_+ 6–21 224.00 1.17 0.58 100.0 MIR30D-201 miRNA GM12878 (Cell line)
ENST00000362283.1 ENST00000362283.1_6_29_+ 6–29 17242.00 90.33 44.46 97.01 MIR30D-201 miRNA GM12878 (Cell line)
ENST00000362291.1 ENST00000362291.1_52_73_+ 52–73 19.00 10.86 0.05 100.0 MIR126-201 miRNA GM12878 (Cell line)
ENST00000362291.1 ENST00000362291.1_15_35_+ 15–35 145.00 82.86 0.37 100.0 MIR126-201 miRNA GM12878 (Cell line)
ENST00000362298.3 ENST00000362298.3_42_63_+ 42–63 2864.00 50.09 7.39 100.0 MIR374A-201 miRNA GM12878 (Cell line)