ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000384027.1 ENST00000384027.1_30_70_+ 30–70 1340.00 1.12 3.46 100.0 SNORD101-201 snoRNA GM12878 (Cell line)
ENST00000384027.1 ENST00000384027.1_2_73_+ 2–73 21285.00 17.85 54.89 89.84 SNORD101-201 snoRNA GM12878 (Cell line)
ENST00000384048.1 ENST00000384048.1_1_66_+ 1–66 166387.00 96.97 429.09 100.0 SNORD37-201 snoRNA GM12878 (Cell line)
ENST00000384304.1 ENST00000384304.1_2_72_+ 2–72 1286.00 38.93 3.32 89.93 SNORD59A-201 snoRNA GM12878 (Cell line)
ENST00000384360.1 ENST00000384360.1_1_47_+ 1–47 8.00 3.03 0.02 100.0 SNORA7B-201 snoRNA GM12878 (Cell line)
ENST00000384390.1 ENST00000384390.1_1_87_+ 1–87 352.00 35.41 0.91 100.0 SNORD14D-201 snoRNA GM12878 (Cell line)
ENST00000384673.1 ENST00000384673.1_82_107_+ 82–107 15851.00 39.60 40.88 100.0 Y_RNA.555-201 misc RNA GM12878 (Cell line)
ENST00000384816.1 ENST00000384816.1_52_73_+ 52–73 141464.00 88.27 364.82 91.21 MIR25-201 miRNA GM12878 (Cell line)
ENST00000384819.1 ENST00000384819.1_7_28_+ 7–28 133.00 89.86 0.34 97.79 MIR99B-201 miRNA GM12878 (Cell line)
ENST00000384832.1 ENST00000384832.1_58_78_+ 58–78 1532.00 28.20 3.95 86.31 MIR23B-201 miRNA GM12878 (Cell line)
ENST00000384832.1 ENST00000384832.1_58_81_+ 58–81 2108.00 38.81 5.44 81.77 MIR23B-201 miRNA GM12878 (Cell line)
ENST00000384836.1 ENST00000384836.1_66_87_+ 66–87 14.00 0.66 0.04 100.0 MIR203A-201 miRNA GM12878 (Cell line)
ENST00000384849.1 ENST00000384849.1_26_48_+ 26–48 76.00 33.63 0.20 100.0 MIR199B-201 miRNA GM12878 (Cell line)
ENST00000384849.1 ENST00000384849.1_65_85_+ 65–85 127.00 56.19 0.33 91.37 MIR199B-201 miRNA GM12878 (Cell line)
ENST00000384850.1 ENST00000384850.1_17_38_+ 17–38 3405.00 96.62 8.78 100.0 MIR30B-201 miRNA GM12878 (Cell line)
ENST00000384853.1 ENST00000384853.1_36_58_+ 36–58 7046.00 89.21 18.17 100.0 MIR181D-201 miRNA GM12878 (Cell line)
ENST00000384857.1 ENST00000384857.1_61_83_+ 61–83 4.00 44.44 0.01 100.0 MIR508-201 miRNA GM12878 (Cell line)
ENST00000384858.1 ENST00000384858.1_27_48_+ 27–48 572.00 90.94 1.48 100.0 MIR215-201 miRNA GM12878 (Cell line)
ENST00000384863.1 ENST00000384863.1_77_98_+ 77–98 7326.00 0.91 18.89 100.0 MIR181A2-201 miRNA GM12878 (Cell line)
ENST00000384873.3 ENST00000384873.3_16_38_+ 16–38 582830.00 98.36 1503.04 99.72 MIR191-201 miRNA GM12878 (Cell line)
ENST00000384879.1 ENST00000384879.1_15_37_+ 15–37 4.00 16.67 0.01 30.77 MIR149-201 miRNA GM12878 (Cell line)
ENST00000384881.1 ENST00000384881.1_27_48_+ 27–48 39024.00 79.05 100.64 91.58 MIR181C-201 miRNA GM12878 (Cell line)
ENST00000384881.1 ENST00000384881.1_66_87_+ 66–87 5016.00 10.16 12.94 100.0 MIR181C-201 miRNA GM12878 (Cell line)
ENST00000384892.1 ENST00000384892.1_15_36_+ 15–36 1155.00 92.70 2.98 100.0 MIR194-1-201 miRNA GM12878 (Cell line)
ENST00000384893.1 ENST00000384893.1_52_72_+ 52–72 13338.00 68.02 34.40 70.75 MIR128-2-201 miRNA GM12878 (Cell line)