ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000384906.1 ENST00000384906.1_13_34_+ 13–34 5583.00 82.14 14.40 91.43 MIR99A-201 miRNA GM12878 (Cell line)
ENST00000384918.1 ENST00000384918.1_54_71_+ 54–71 2.00 0.50 0.01 100.0 MIR28-201 miRNA GM12878 (Cell line)
ENST00000384918.1 ENST00000384918.1_54_75_+ 54–75 314.00 79.09 0.81 95.73 MIR28-201 miRNA GM12878 (Cell line)
ENST00000384918.1 ENST00000384918.1_14_35_+ 14–35 56.00 14.11 0.14 94.92 MIR28-201 miRNA GM12878 (Cell line)
ENST00000384958.1 ENST00000384958.1_27_48_+ 27–48 2712.00 76.03 6.99 100.0 MIR183-201 miRNA GM12878 (Cell line)
ENST00000384967.1 ENST00000384967.1_56_76_+ 56–76 8.00 66.67 0.02 100.0 MIR145-201 miRNA GM12878 (Cell line)
ENST00000384967.1 ENST00000384967.1_16_38_+ 16–38 1.00 8.33 0.00 100.0 MIR145-201 miRNA GM12878 (Cell line)
ENST00000384988.1 ENST00000384988.1_15_36_+ 15–36 192060.00 95.83 495.30 97.71 MIR186-201 miRNA GM12878 (Cell line)
ENST00000384997.3 ENST00000384997.3_57_79_+ 57–79 359.00 90.43 0.93 100.0 MIR200B-201 miRNA GM12878 (Cell line)
ENST00000385004.1 ENST00000385004.1_16_38_+ 16–38 101535.00 90.41 261.84 95.82 MIR181B2-201 miRNA GM12878 (Cell line)
ENST00000385011.1 ENST00000385011.1_27_48_+ 27–48 806.00 89.36 2.08 92.86 MIR10B-201 miRNA GM12878 (Cell line)
ENST00000385018.1 ENST00000385018.1_51_73_+ 51–73 29119.17 51.54 75.09 63.67 MIR130B-201 miRNA GM12878 (Cell line)
ENST00000385018.1 ENST00000385018.1_51_71_+ 51–71 18553.56 32.84 47.85 38.86 MIR130B-201 miRNA GM12878 (Cell line)
ENST00000385018.1 ENST00000385018.1_13_34_+ 13–34 5809.00 10.28 14.98 100.0 MIR130B-201 miRNA GM12878 (Cell line)
ENST00000385019.1 ENST00000385019.1_6_28_+ 6–28 4.00 2.48 0.01 100.0 MIR199A1-201 miRNA GM12878 (Cell line)
ENST00000385021.3 ENST00000385021.3_51_72_+ 51–72 4.00 66.67 0.01 100.0 MIR487B-201 miRNA GM12878 (Cell line)
ENST00000385024.1 ENST00000385024.1_11_33_+ 11–33 45311.95 54.90 116.85 57.02 MIR93-201 miRNA GM12878 (Cell line)
ENST00000385024.1 ENST00000385024.1_11_31_+ 11–31 35193.19 42.64 90.76 51.59 MIR93-201 miRNA GM12878 (Cell line)
ENST00000385025.1 ENST00000385025.1_20_41_+ 20–41 8717.00 76.74 22.48 86.86 MIR532-201 miRNA GM12878 (Cell line)
ENST00000385045.1 ENST00000385045.1_20_41_+ 20–41 8083.00 74.16 20.84 100.0 MIR15B-201 miRNA GM12878 (Cell line)
ENST00000385048.3 ENST00000385048.3_16_37_+ 16–37 1130.00 86.19 2.91 100.0 MIR150-201 miRNA GM12878 (Cell line)
ENST00000385050.3 ENST00000385050.3_53_74_+ 53–74 47.00 32.19 0.12 100.0 MIR542-201 miRNA GM12878 (Cell line)
ENST00000385051.1 ENST00000385051.1_51_71_+ 51–71 852.00 7.37 2.20 100.0 MIR500A-201 miRNA GM12878 (Cell line)
ENST00000385051.1 ENST00000385051.1_52_74_+ 52–74 6995.00 60.52 18.04 100.0 MIR500A-201 miRNA GM12878 (Cell line)
ENST00000385092.1 ENST00000385092.1_6_25_+ 6–25 19.00 0.92 0.05 90.48 MIR30A-201 miRNA GM12878 (Cell line)