ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365394.1 ENST00000365394.1_85_96_+ 85–96 235.00 9.45 0.61 100.0 RNA5SP77-201 rRNA pseudogene GM12878 (Cell line)
ENST00000365423.1 ENST00000365423.1_4_67_+ 4–67 2.00 5.00 0.01 100.0 SNORD114-22-201 snoRNA GM12878 (Cell line)
ENST00000365444.1 ENST00000365444.1_3_69_+ 3–69 52452.00 80.44 135.27 100.0 SNORD6-201 snoRNA GM12878 (Cell line)
ENST00000365444.1 ENST00000365444.1_30_69_+ 30–69 2565.00 3.93 6.61 100.0 SNORD6-201 snoRNA GM12878 (Cell line)
ENST00000365484.1 ENST00000365484.1_1_95_+ 1–95 369.00 2.93 0.95 100.0 RNY3-201 misc RNA GM12878 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 975.00 4.41 2.51 100.0 SNORD82-201 snoRNA GM12878 (Cell line)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 1739.00 7.86 4.48 83.29 SNORD82-201 snoRNA GM12878 (Cell line)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 486.00 2.20 1.25 93.64 SNORD82-201 snoRNA GM12878 (Cell line)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 8899.00 40.24 22.95 100.0 SNORD82-201 snoRNA GM12878 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 2367.02 10.70 6.10 48.56 SNORD82-201 snoRNA GM12878 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 2668.52 12.07 6.88 54.75 SNORD82-201 snoRNA GM12878 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 1586.00 7.17 4.09 100.0 SNORD82-201 snoRNA GM12878 (Cell line)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 211434.00 94.15 545.26 97.24 MIR146B-201 miRNA GM12878 (Cell line)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 74.00 18.55 0.19 100.0 SNHG20-201 lncRNA GM12878 (Cell line)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 14245.00 40.88 36.74 100.0 ATP5MK-205 protein coding GM12878 (Cell line)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 4676.00 13.42 12.06 100.0 ATP5MK-205 protein coding GM12878 (Cell line)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 6074.00 36.79 15.66 100.0 LINC01556-201 lncRNA GM12878 (Cell line)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 19007.00 58.17 49.02 100.0 ATAD3A-202 protein coding GM12878 (Cell line)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 1669.00 54.47 4.30 79.89 TMC5-202 protein coding GM12878 (Cell line)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 4263.00 96.69 10.99 100.0 ZMYM2-203 protein coding GM12878 (Cell line)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 132.00 1.51 0.34 100.0 RNVU1-7-201 snRNA GM12878 (Cell line)
ENST00000383884.1 ENST00000383884.1_1_75_+ 1–75 6882.00 70.55 17.75 100.0 SNORD24-201 snoRNA GM12878 (Cell line)
ENST00000383924.1 ENST00000383924.1_85_107_+ 85–107 33861.00 93.73 87.32 100.0 Y_RNA.389-201 misc RNA GM12878 (Cell line)
ENST00000384027.1 ENST00000384027.1_30_70_+ 30–70 1340.00 1.12 3.46 100.0 SNORD101-201 snoRNA GM12878 (Cell line)
ENST00000384027.1 ENST00000384027.1_42_70_+ 42–70 1128.00 0.95 2.91 100.0 SNORD101-201 snoRNA GM12878 (Cell line)