ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000364315.1 ENST00000364315.1_87_119_+ 87–119 978.00 0.93 2.52 100.0 RNA5SP202-201 rRNA pseudogene GM12878 (Cell line)
ENST00000364370.1 ENST00000364370.1_4_67_+ 4–67 1.00 2.63 0.00 100.0 SNORD114-9-201 snoRNA GM12878 (Cell line)
ENST00000364409.1 ENST00000364409.1_68_90_+ 68–90 6060.00 8.89 15.63 100.0 Y_RNA.234-201 misc RNA GM12878 (Cell line)
ENST00000364451.1 ENST00000364451.1_1_95_+ 1–95 36.00 0.02 0.09 100.0 RNA5S9-201 rRNA GM12878 (Cell line)
ENST00000364543.1 ENST00000364543.1_1_39_+ 1–39 551.00 1.38 1.42 100.0 RNA5SP141-201 rRNA pseudogene GM12878 (Cell line)
ENST00000364722.1 ENST00000364722.1_2_30_+ 2–30 18183.00 83.43 46.89 100.0 ENST00000364722 snoRNA GM12878 (Cell line)
ENST00000364884.1 ENST00000364884.1_1_66_+ 1–66 5922.00 15.06 15.27 100.0 SNORD52-201 snoRNA GM12878 (Cell line)
ENST00000364915.1 ENST00000364915.1_2_74_+ 2–74 160.00 8.92 0.41 33.06 SNORD117-201 snoRNA GM12878 (Cell line)
ENST00000364915.1 ENST00000364915.1_1_76_+ 1–76 324.00 18.06 0.84 67.36 SNORD117-201 snoRNA GM12878 (Cell line)
ENST00000364969.1 ENST00000364969.1_3_71_+ 3–71 3.00 50.00 0.01 50.0 SNORD114-3-201 snoRNA GM12878 (Cell line)
ENST00000364991.1 ENST00000364991.1_17_30_+ 17–30 273.00 1.47 0.70 100.0 RNA5SP298-201 rRNA pseudogene GM12878 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_38_+ 1–38 967.00 4.62 2.49 100.0 SNORD38A-201 snoRNA GM12878 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_41_+ 1–41 217.00 1.04 0.56 100.0 SNORD38A-201 snoRNA GM12878 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_68_+ 1–68 17487.00 83.48 45.10 100.0 SNORD38A-201 snoRNA GM12878 (Cell line)
ENST00000365328.1 ENST00000365328.1_260_331_+ 260–331 25.00 0.39 0.06 100.0 7SK.1-201 misc RNA GM12878 (Cell line)
ENST00000365328.1 ENST00000365328.1_270_331_+ 270–331 48.00 0.75 0.12 68.57 7SK.1-201 misc RNA GM12878 (Cell line)
ENST00000365328.1 ENST00000365328.1_1_76_+ 1–76 178.00 2.80 0.46 100.0 7SK.1-201 misc RNA GM12878 (Cell line)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 5.00 0.08 0.01 100.0 7SK.1-201 misc RNA GM12878 (Cell line)
ENST00000365328.1 ENST00000365328.1_273_331_+ 273–331 92.00 1.45 0.24 50.83 7SK.1-201 misc RNA GM12878 (Cell line)
ENST00000365328.1 ENST00000365328.1_1_63_+ 1–63 572.00 8.99 1.48 87.46 7SK.1-201 misc RNA GM12878 (Cell line)
ENST00000365328.1 ENST00000365328.1_282_331_+ 282–331 64.00 1.01 0.17 100.0 7SK.1-201 misc RNA GM12878 (Cell line)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 14.00 0.22 0.04 100.0 7SK.1-201 misc RNA GM12878 (Cell line)
ENST00000365328.1 ENST00000365328.1_277_331_+ 277–331 707.00 11.11 1.82 88.82 7SK.1-201 misc RNA GM12878 (Cell line)
ENST00000365382.1 ENST00000365382.1_1_88_+ 1–88 12.00 1.12 0.03 100.0 SNORD14C-201 snoRNA GM12878 (Cell line)
ENST00000365391.1 ENST00000365391.1_2_82_+ 2–82 1.00 50.00 0.00 100.0 SNORD115-44-201 snoRNA GM12878 (Cell line)