ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000363286.1 ENST00000363286.1_55_116_+ 55–116 147.00 4.08 0.38 100.0 RNU5B-1-201 snRNA GM12878 (Cell line)
ENST00000363286.1 ENST00000363286.1_68_116_+ 68–116 33.00 0.91 0.09 100.0 RNU5B-1-201 snRNA GM12878 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_78_+ 1–78 104.00 2.88 0.27 65.41 RNU5B-1-201 snRNA GM12878 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_86_+ 1–86 59.00 1.64 0.15 100.0 RNU5B-1-201 snRNA GM12878 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_69_+ 1–69 216.00 5.99 0.56 100.0 RNU5B-1-201 snRNA GM12878 (Cell line)
ENST00000363293.1 ENST00000363293.1_2_82_+ 2–82 8.00 61.54 0.02 100.0 SNORD115-18-201 snoRNA GM12878 (Cell line)
ENST00000363341.1 ENST00000363341.1_1_32_+ 1–32 180.00 0.39 0.46 100.0 RNY4P27-201 misc RNA GM12878 (Cell line)
ENST00000363341.1 ENST00000363341.1_1_36_+ 1–36 9.00 0.02 0.02 100.0 RNY4P27-201 misc RNA GM12878 (Cell line)
ENST00000363444.1 ENST00000363444.1_74_99_+ 74–99 1557.00 18.41 4.02 100.0 Y_RNA.136-201 misc RNA GM12878 (Cell line)
ENST00000363742.1 ENST00000363742.1_4_67_+ 4–67 3.00 7.50 0.01 100.0 SNORD114-25-201 snoRNA GM12878 (Cell line)
ENST00000363762.1 ENST00000363762.1_3_72_+ 3–72 1.00 100.00 0.00 100.0 SNORD113-7-201 snoRNA GM12878 (Cell line)
ENST00000363872.1 ENST00000363872.1_74_98_+ 74–98 799.00 24.79 2.06 100.0 Y_RNA.181-201 misc RNA GM12878 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_63_+ 1–63 48.00 0.03 0.12 100.0 RNY1-201 misc RNA GM12878 (Cell line)
ENST00000364228.1 ENST00000364228.1_24_109_+ 24–109 76.00 0.05 0.20 100.0 RNY1-201 misc RNA GM12878 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_39_+ 1–39 409.00 0.28 1.05 100.0 RNY1-201 misc RNA GM12878 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_32_+ 1–32 24581.15 17.12 63.39 55.37 RNY1-201 misc RNA GM12878 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_30_+ 1–30 19555.57 13.62 50.43 47.23 RNY1-201 misc RNA GM12878 (Cell line)
ENST00000364315.1 ENST00000364315.1_52_119_+ 52–119 152.00 0.14 0.39 100.0 RNA5SP202-201 rRNA pseudogene GM12878 (Cell line)
ENST00000364315.1 ENST00000364315.1_37_95_+ 37–95 262.33 0.25 0.68 39.69 RNA5SP202-201 rRNA pseudogene GM12878 (Cell line)
ENST00000364315.1 ENST00000364315.1_62_119_+ 62–119 344.00 0.33 0.89 100.0 RNA5SP202-201 rRNA pseudogene GM12878 (Cell line)
ENST00000364315.1 ENST00000364315.1_35_95_+ 35–95 389.26 0.37 1.00 53.47 RNA5SP202-201 rRNA pseudogene GM12878 (Cell line)
ENST00000364315.1 ENST00000364315.1_71_95_+ 71–95 500.00 0.48 1.29 100.0 RNA5SP202-201 rRNA pseudogene GM12878 (Cell line)
ENST00000364315.1 ENST00000364315.1_71_119_+ 71–119 312.00 0.30 0.80 100.0 RNA5SP202-201 rRNA pseudogene GM12878 (Cell line)
ENST00000364315.1 ENST00000364315.1_83_119_+ 83–119 1791.00 1.71 4.62 100.0 RNA5SP202-201 rRNA pseudogene GM12878 (Cell line)
ENST00000364315.1 ENST00000364315.1_101_119_+ 101–119 4927.71 4.70 12.71 9.0 RNA5SP202-201 rRNA pseudogene GM12878 (Cell line)