ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000823279.1 ENST00000823279.1_107_169_+ 107–169 200.68 1.24 0.52 38.74 ENST00000823279 lncRNA GM12878 (Cell line)
ENST00000823279.1 ENST00000823279.1_105_169_+ 105–169 159.48 0.99 0.41 29.86 ENST00000823279 lncRNA GM12878 (Cell line)
ENST00000823279.1 ENST00000823279.1_131_169_+ 131–169 481.00 2.98 1.24 90.41 ENST00000823279 lncRNA GM12878 (Cell line)
ENST00000823279.1 ENST00000823279.1_151_169_+ 151–169 934.04 5.79 2.41 26.63 ENST00000823279 lncRNA GM12878 (Cell line)
ENST00000823801.1 ENST00000823801.1_153_169_+ 153–169 2499.09 15.52 6.44 66.98 ENST00000823801 lncRNA GM12878 (Cell line)
ENST00000828033.1 ENST00000828033.1_278_318_+ 278–318 3390.00 0.27 8.74 100.0 GAS5-377 lncRNA GM12878 (Cell line)
ENST00000828033.1 ENST00000828033.1_252_322_+ 252–322 305935.00 24.57 788.96 100.0 GAS5-377 lncRNA GM12878 (Cell line)
ENST00000828033.1 ENST00000828033.1_290_318_+ 290–318 2706.00 0.22 6.98 100.0 GAS5-377 lncRNA GM12878 (Cell line)
ENST00000828033.1 ENST00000828033.1_252_318_+ 252–318 897449.00 72.07 2314.40 100.0 GAS5-377 lncRNA GM12878 (Cell line)
ENST00000830954.1 ENST00000830954.1_968_989_+ 968–989 135.00 63.68 0.35 100.0 MIR205HG-245 lncRNA GM12878 (Cell line)
ENST00000833535.1 ENST00000833535.1_763_828_+ 763–828 851.00 14.67 2.19 100.0 TAF12-DT-204 lncRNA GM12878 (Cell line)
ENST00000836993.1 ENST00000836993.1_387_463_+ 387–463 117498.00 88.32 303.01 99.93 ZFAS1-238 lncRNA GM12878 (Cell line)
ENST00000836993.1 ENST00000836993.1_422_463_+ 422–463 353.00 0.27 0.91 100.0 ZFAS1-238 lncRNA GM12878 (Cell line)
ENST00000836993.1 ENST00000836993.1_402_463_+ 402–463 657.00 0.49 1.69 100.0 ZFAS1-238 lncRNA GM12878 (Cell line)
ENST00000836993.1 ENST00000836993.1_410_463_+ 410–463 4822.00 3.62 12.44 100.0 ZFAS1-238 lncRNA GM12878 (Cell line)
ENST00000836997.1 ENST00000836997.1_305_352_+ 305–352 552.00 6.57 1.42 100.0 ZFAS1-242 lncRNA GM12878 (Cell line)
ENST00000836997.1 ENST00000836997.1_305_380_+ 305–380 5981.00 71.18 15.42 100.0 ZFAS1-242 lncRNA GM12878 (Cell line)
ENST00000837997.1 ENST00000837997.1_211_224_+ 211–224 8247.00 33.73 21.27 100.0 ENST00000837997 lncRNA GM12878 (Cell line)
ENST00000837997.1 ENST00000837997.1_214_225_+ 214–225 5937.00 24.29 15.31 100.0 ENST00000837997 lncRNA GM12878 (Cell line)
ENST00000839036.1 ENST00000839036.1_40_61_+ 40–61 5507.00 68.09 14.20 79.39 ENST00000839036 lncRNA GM12878 (Cell line)
ENST00000849527.1 ENST00000849527.1_293_307_+ 293–307 677.00 11.15 1.75 100.0 ENST00000849527 lncRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_2_52_+ 2–52 4529.00 2.90 11.68 100.0 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_3_32_+ 3–32 4070.00 2.61 10.50 94.67 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-121020729 tRNA-transcript-chr1-121020729_1_54_+ 1–54 656.00 0.36 1.69 100.0 TRNA-TRANSCRIPT-CHR1-121020729 Val tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_23_+ 1–23 25807.00 60.81 66.55 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA GM12878 (Cell line)