ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000776279.1 ENST00000776279.1_176_234_+ 176–234 209.02 0.01 0.54 58.88 SNHG25-206 lncRNA GM12878 (Cell line)
ENST00000776279.1 ENST00000776279.1_172_234_+ 172–234 403.03 0.03 1.04 70.21 SNHG25-206 lncRNA GM12878 (Cell line)
ENST00000776279.1 ENST00000776279.1_174_234_+ 174–234 283.15 0.02 0.73 32.89 SNHG25-206 lncRNA GM12878 (Cell line)
ENST00000776279.1 ENST00000776279.1_196_234_+ 196–234 6282.00 0.41 16.20 94.04 SNHG25-206 lncRNA GM12878 (Cell line)
ENST00000776279.1 ENST00000776279.1_184_234_+ 184–234 387.00 0.03 1.00 100.0 SNHG25-206 lncRNA GM12878 (Cell line)
ENST00000778783.1 ENST00000778783.1_84_171_+ 84–171 2718.00 22.00 7.01 100.0 ENST00000778783 lncRNA GM12878 (Cell line)
ENST00000779378.1 ENST00000779378.1_905_928_+ 905–928 2600023.00 89.69 6705.10 94.93 MIR155HG-205 lncRNA GM12878 (Cell line)
ENST00000785178.1 ENST00000785178.1_899_938_+ 899–938 33829.00 9.53 87.24 100.0 ENST00000785178 lncRNA GM12878 (Cell line)
ENST00000786284.1 ENST00000786284.1_38_80_+ 38–80 5007.00 6.42 12.91 53.69 ENST00000786284 lncRNA GM12878 (Cell line)
ENST00000786284.1 ENST00000786284.1_46_80_+ 46–80 20970.00 26.87 54.08 100.0 ENST00000786284 lncRNA GM12878 (Cell line)
ENST00000786284.1 ENST00000786284.1_40_80_+ 40–80 4318.00 5.53 11.14 54.47 ENST00000786284 lncRNA GM12878 (Cell line)
ENST00000788343.1 ENST00000788343.1_17_107_+ 17–107 74196.00 65.56 191.34 95.26 ENST00000788343 lncRNA GM12878 (Cell line)
ENST00000797550.1 ENST00000797550.1_7_63_+ 7–63 33366.31 10.07 86.05 36.0 ENST00000797550 lncRNA GM12878 (Cell line)
ENST00000797550.1 ENST00000797550.1_9_63_+ 9–63 28546.35 8.61 73.62 30.8 ENST00000797550 lncRNA GM12878 (Cell line)
ENST00000797550.1 ENST00000797550.1_9_52_+ 9–52 207068.00 62.47 534.00 99.77 ENST00000797550 lncRNA GM12878 (Cell line)
ENST00000806893.1 ENST00000806893.1_425_447_+ 425–447 748262.00 81.67 1929.67 95.26 MIR181A1HG-212 lncRNA GM12878 (Cell line)
ENST00000806893.1 ENST00000806893.1_465_486_+ 465–486 7877.00 0.86 20.31 100.0 MIR181A1HG-212 lncRNA GM12878 (Cell line)
ENST00000812667.1 ENST00000812667.1_308_348_+ 308–348 26216.00 58.92 67.61 100.0 C19orf48P-218 lncRNA GM12878 (Cell line)
ENST00000812667.1 ENST00000812667.1_307_393_+ 307–393 9188.00 20.65 23.69 100.0 C19orf48P-218 lncRNA GM12878 (Cell line)
ENST00000817026.1 ENST00000817026.1_659_679_+ 659–679 7632.00 22.97 19.68 100.0 ENST00000817026 lncRNA GM12878 (Cell line)
ENST00000823279.1 ENST00000823279.1_126_169_+ 126–169 369.00 2.29 0.95 100.0 ENST00000823279 lncRNA GM12878 (Cell line)
ENST00000823279.1 ENST00000823279.1_109_169_+ 109–169 190.54 1.18 0.49 45.69 ENST00000823279 lncRNA GM12878 (Cell line)
ENST00000823279.1 ENST00000823279.1_103_169_+ 103–169 205.68 1.27 0.53 62.14 ENST00000823279 lncRNA GM12878 (Cell line)
ENST00000823279.1 ENST00000823279.1_86_169_+ 86–169 94.00 0.58 0.24 100.0 ENST00000823279 lncRNA GM12878 (Cell line)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 203.00 1.26 0.52 100.0 ENST00000823279 lncRNA GM12878 (Cell line)