ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 459686.00 49.55 1185.47 73.39 MIR142HG-201 lncRNA GM12878 (Cell line)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 278.00 1.60 0.72 100.0 SNORD3C-201 snoRNA GM12878 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 177.91 1.39 0.46 70.32 RPL23A-208 retained intron GM12878 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 80.17 0.63 0.21 46.89 RPL23A-208 retained intron GM12878 (Cell line)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 4343.00 33.88 11.20 64.31 RPL23A-208 retained intron GM12878 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 7700.00 60.07 19.86 94.05 RPL23A-208 retained intron GM12878 (Cell line)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 37.00 0.05 0.10 15.04 RPL17-211 retained intron GM12878 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 102.00 0.13 0.26 2.0 RPL17-211 retained intron GM12878 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 183.00 0.24 0.47 100.0 RPL17-211 retained intron GM12878 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 63429.00 83.81 163.57 99.89 RPL17-211 retained intron GM12878 (Cell line)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 3184.00 4.21 8.21 99.38 RPL17-211 retained intron GM12878 (Cell line)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 6.00 14.63 0.02 66.67 ENST00000582320 lncRNA GM12878 (Cell line)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 21.00 51.22 0.05 100.0 ENST00000582320 lncRNA GM12878 (Cell line)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 1.00 2.44 0.00 100.0 ENST00000582320 lncRNA GM12878 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 2205.00 19.71 5.69 100.0 RPL17-214 retained intron GM12878 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 1966.41 17.58 5.07 38.47 RPL17-214 retained intron GM12878 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 3770.00 33.70 9.72 63.03 RPL17-214 retained intron GM12878 (Cell line)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 4939.00 0.16 12.74 100.0 SNORD43-201 snoRNA GM12878 (Cell line)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 3006705.00 98.67 7753.88 99.71 SNORD43-201 snoRNA GM12878 (Cell line)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 2201.00 0.07 5.68 100.0 SNORD43-201 snoRNA GM12878 (Cell line)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 1449.00 74.12 3.74 100.0 MIR151B-201 miRNA GM12878 (Cell line)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 300.00 1.61 0.77 100.0 SNORD3A-201 snoRNA GM12878 (Cell line)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 2516.00 38.67 6.49 100.0 SNORD92-201 snoRNA GM12878 (Cell line)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 83739.00 59.46 215.95 100.0 NSRP1-214 protein coding GM12878 (Cell line)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 32688.00 23.21 84.30 85.25 NSRP1-214 protein coding GM12878 (Cell line)