ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 236.00 0.49 0.61 100.0 RPL4-207 retained intron GM12878 (Cell line)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 97679.00 47.57 251.90 88.95 ENST00000565336 lncRNA GM12878 (Cell line)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 58417.00 28.45 150.65 89.23 ENST00000565336 lncRNA GM12878 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 849.00 15.47 2.19 100.0 RBMX-210 retained intron GM12878 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 192.00 3.50 0.50 100.0 RBMX-210 retained intron GM12878 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 3357.00 61.17 8.66 99.38 RBMX-210 retained intron GM12878 (Cell line)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 12927.00 58.60 33.34 100.0 RPL4-214 retained intron GM12878 (Cell line)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 244.00 1.11 0.63 100.0 RPL4-214 retained intron GM12878 (Cell line)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 64389.93 31.03 166.05 54.65 POLG-DT-202 lncRNA GM12878 (Cell line)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 58003.03 27.96 149.58 57.22 POLG-DT-202 lncRNA GM12878 (Cell line)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 3279.00 1.58 8.46 100.0 POLG-DT-202 lncRNA GM12878 (Cell line)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 18.00 0.01 0.05 100.0 ENST00000570843 lncRNA GM12878 (Cell line)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 2.00 0.00 0.01 100.0 ENST00000570843 lncRNA GM12878 (Cell line)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 11129.00 7.02 28.70 100.0 ENST00000570843 lncRNA GM12878 (Cell line)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 478.00 33.01 1.23 100.0 MIR497HG-207 lncRNA GM12878 (Cell line)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 263026.00 98.55 678.31 99.15 MIR22HG-212 lncRNA GM12878 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 1150.00 1.74 2.97 35.19 SNORD53B-201 snoRNA GM12878 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 38157.00 57.62 98.40 63.08 SNORD53B-201 snoRNA GM12878 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 2118.00 3.20 5.46 64.81 SNORD53B-201 snoRNA GM12878 (Cell line)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 741.00 72.72 1.91 100.0 ENST00000578036 lncRNA GM12878 (Cell line)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 16787.00 84.09 43.29 100.0 RPL23A-207 protein coding GM12878 (Cell line)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 17459.00 93.60 45.02 100.0 MIR744-201 miRNA GM12878 (Cell line)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 4570.00 79.95 11.79 100.0 MIR378C-201 miRNA GM12878 (Cell line)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 169504.00 18.27 437.13 54.45 MIR142HG-201 lncRNA GM12878 (Cell line)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 36536.00 3.94 94.22 100.0 MIR142HG-201 lncRNA GM12878 (Cell line)