ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 573.00 0.57 1.48 100.0 MIR23AHG-201 lncRNA GM12878 (Cell line)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 2703.00 2.69 6.97 72.6 MIR23AHG-201 lncRNA GM12878 (Cell line)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 73206.00 72.87 188.79 94.48 MIR23AHG-201 lncRNA GM12878 (Cell line)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 2144.00 2.13 5.53 94.62 MIR23AHG-201 lncRNA GM12878 (Cell line)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 688.00 0.68 1.77 57.72 MIR23AHG-201 lncRNA GM12878 (Cell line)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 1544.00 42.37 3.98 100.0 ODAD3-204 nonsense mediated decay GM12878 (Cell line)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 297001.00 9.57 765.93 100.0 VMP1-217 retained intron GM12878 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 14939.00 0.48 38.53 100.0 VMP1-217 retained intron GM12878 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 1988764.00 64.07 5128.75 73.55 VMP1-217 retained intron GM12878 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 8980.00 0.32 23.16 100.0 C19orf48P-203 retained intron GM12878 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 691191.75 24.95 1782.49 32.46 C19orf48P-203 retained intron GM12878 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 1979509.28 71.46 5104.88 72.97 C19orf48P-203 retained intron GM12878 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 7778.00 0.28 20.06 89.19 C19orf48P-203 retained intron GM12878 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 6738.00 0.24 17.38 100.0 C19orf48P-203 retained intron GM12878 (Cell line)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 7.00 0.00 0.02 100.0 C19orf48P-203 retained intron GM12878 (Cell line)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 72.00 8.11 0.19 100.0 RPS11-206 retained intron GM12878 (Cell line)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 105.00 11.82 0.27 100.0 RPS11-206 retained intron GM12878 (Cell line)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 830.00 73.78 2.14 77.72 CARMN-209 lncRNA GM12878 (Cell line)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 383.00 7.80 0.99 100.0 ENST00000602478 lncRNA GM12878 (Cell line)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 57.00 17.33 0.15 100.0 PPFIA1P1-201 processed pseudogene GM12878 (Cell line)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 1.00 100.00 0.00 100.0 SNORD114-21-201 snoRNA GM12878 (Cell line)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 15729.00 93.25 40.56 100.0 MIR98-201 miRNA GM12878 (Cell line)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 1.00 33.33 0.00 100.0 SNORD113-5-201 snoRNA GM12878 (Cell line)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 31939.00 95.67 82.37 100.0 MIR15A-201 miRNA GM12878 (Cell line)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 3926.00 32.58 10.12 100.0 SNHG21-206 retained intron GM12878 (Cell line)