ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 64.00 0.13 0.17 100.0 RN7SL2-201 misc RNA GM12878 (Cell line)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 8441.00 16.94 21.77 29.66 RN7SL2-201 misc RNA GM12878 (Cell line)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 1.00 0.97 0.00 100.0 RGS11-208 retained intron GM12878 (Cell line)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 1997.00 42.58 5.15 99.25 NOP56-217 protein coding CDS not defined GM12878 (Cell line)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 171.00 3.65 0.44 98.28 NOP56-217 protein coding CDS not defined GM12878 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 165.00 0.17 0.43 46.48 RABGGTB-213 protein coding CDS not defined GM12878 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 392.00 0.40 1.01 100.0 RABGGTB-213 protein coding CDS not defined GM12878 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 69800.00 71.09 180.00 99.0 RABGGTB-213 protein coding CDS not defined GM12878 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 38.00 0.04 0.10 32.48 RABGGTB-213 protein coding CDS not defined GM12878 (Cell line)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 5597.00 5.70 14.43 100.0 RABGGTB-213 protein coding CDS not defined GM12878 (Cell line)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 2703.00 2.75 6.97 100.0 RABGGTB-213 protein coding CDS not defined GM12878 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 79.00 0.08 0.20 67.52 RABGGTB-213 protein coding CDS not defined GM12878 (Cell line)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 5009.00 67.07 12.92 100.0 GNL3-211 retained intron GM12878 (Cell line)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 948.00 12.69 2.44 100.0 GNL3-211 retained intron GM12878 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 3357.00 80.81 8.66 100.0 RPL5-205 retained intron GM12878 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 147.00 3.54 0.38 100.0 RPL5-205 retained intron GM12878 (Cell line)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 4869.00 4.51 12.56 100.0 ZBED9-AS1-201 lncRNA GM12878 (Cell line)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 2005.00 64.39 5.17 100.0 RPS3A-206 retained intron GM12878 (Cell line)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 21625.00 91.48 55.77 100.0 COX7C-203 protein coding GM12878 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 162697.67 49.21 419.58 53.48 RACK1-229 protein coding GM12878 (Cell line)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 981.00 0.30 2.53 55.87 RACK1-229 protein coding GM12878 (Cell line)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 16.00 0.00 0.04 100.0 RACK1-229 protein coding GM12878 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 166266.76 50.29 428.78 52.36 RACK1-229 protein coding GM12878 (Cell line)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 218404.00 9.34 563.23 47.14 RACK1-230 retained intron GM12878 (Cell line)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 2059564.00 88.07 5311.33 92.24 RACK1-230 retained intron GM12878 (Cell line)