ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 18031.00 93.18 46.50 100.0 NDE1-202 protein coding GM12878 (Cell line)
ENST00000401172.1 ENST00000401172.1_46_67_+ 46–67 50.00 92.59 0.13 100.0 MIR208B-201 miRNA GM12878 (Cell line)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 141.00 57.32 0.36 100.0 MIR450B-201 miRNA GM12878 (Cell line)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 190.00 61.29 0.49 100.0 MIR887-201 miRNA GM12878 (Cell line)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 3.00 100.00 0.01 100.0 MIR889-201 miRNA GM12878 (Cell line)
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 91.00 27.41 0.23 100.0 SNORD111-201 snoRNA GM12878 (Cell line)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 1748.00 13.09 4.51 49.8 SNORD88A-201 snoRNA GM12878 (Cell line)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 2446.00 96.22 6.31 100.0 MIR548K-201 miRNA GM12878 (Cell line)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 628.00 61.21 1.62 100.0 MIR320B2-201 miRNA GM12878 (Cell line)
ENST00000408537.1 ENST00000408537.1_15_35_+ 15–35 1072.00 93.06 2.76 100.0 MIR1271-201 miRNA GM12878 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 172.00 0.16 0.44 100.0 SNORD100-201 snoRNA GM12878 (Cell line)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 48.00 0.05 0.12 100.0 SNORD100-201 snoRNA GM12878 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 96465.00 91.38 248.77 100.0 SNORD100-201 snoRNA GM12878 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 1544.00 1.46 3.98 100.0 SNORD100-201 snoRNA GM12878 (Cell line)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 1069.00 55.62 2.76 100.0 SNORD111B-201 snoRNA GM12878 (Cell line)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 131.00 8.59 0.34 100.0 RNU2-36P-201 snRNA GM12878 (Cell line)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 87685.00 83.52 226.13 93.29 SNORD19C-201 snoRNA GM12878 (Cell line)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 3095.00 2.95 7.98 100.0 SNORD19C-201 snoRNA GM12878 (Cell line)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 4011.00 8.66 10.34 100.0 SNORD12B-201 snoRNA GM12878 (Cell line)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 1286.00 2.78 3.32 100.0 SNORD12B-201 snoRNA GM12878 (Cell line)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 37050.00 80.00 95.55 97.07 SNORD12B-201 snoRNA GM12878 (Cell line)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 7.00 0.02 0.02 100.0 Y_RNA.609-201 misc RNA GM12878 (Cell line)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 14824.00 47.86 38.23 100.0 Y_RNA.612-201 misc RNA GM12878 (Cell line)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 217.00 5.02 0.56 100.0 SNORD71-201 snoRNA GM12878 (Cell line)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 3410.00 78.81 8.79 98.33 SNORD71-201 snoRNA GM12878 (Cell line)