ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 2817.00 62.75 7.26 100.0 MIR501-201 miRNA GM12878 (Cell line)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 29911.00 83.05 77.14 100.0 MIR769-201 miRNA GM12878 (Cell line)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 15939.00 66.99 41.10 100.0 KRTAP19-1-201 protein coding GM12878 (Cell line)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 6.00 31.58 0.02 100.0 MIR708-201 miRNA GM12878 (Cell line)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 5.00 71.43 0.01 100.0 MIR509-3-201 miRNA GM12878 (Cell line)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 8270.00 92.77 21.33 100.0 MIR301B-201 miRNA GM12878 (Cell line)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 447.00 28.69 1.15 77.2 RNU1-82P-201 snRNA GM12878 (Cell line)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 1635.00 12.09 4.22 70.29 SNORD66-201 snoRNA GM12878 (Cell line)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 2079.00 15.38 5.36 100.0 SNORD66-201 snoRNA GM12878 (Cell line)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 303.00 2.24 0.78 100.0 SNORD66-201 snoRNA GM12878 (Cell line)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 1748.00 12.93 4.51 100.0 SNORD66-201 snoRNA GM12878 (Cell line)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 2369.00 73.64 6.11 100.0 U3.17-201 snoRNA GM12878 (Cell line)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 3904.00 78.61 10.07 100.0 SNORD17-201 snoRNA GM12878 (Cell line)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 1853.00 18.74 4.78 100.0 SNORD72-201 snoRNA GM12878 (Cell line)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 185.00 17.21 0.48 100.0 SNORD70B-201 snoRNA GM12878 (Cell line)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 24891.00 51.57 64.19 84.84 RNY4P18-201 misc RNA GM12878 (Cell line)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 7093.00 69.62 18.29 94.79 SNORD90-201 snoRNA GM12878 (Cell line)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 1473.00 14.46 3.80 100.0 SNORD90-201 snoRNA GM12878 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 27386.00 70.08 70.62 100.0 SNORD69-201 snoRNA GM12878 (Cell line)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 696.00 1.78 1.79 100.0 SNORD69-201 snoRNA GM12878 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 147.00 0.38 0.38 100.0 SNORD69-201 snoRNA GM12878 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 6628.00 16.96 17.09 100.0 SNORD69-201 snoRNA GM12878 (Cell line)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 583.00 13.53 1.50 93.88 SNORD70-201 snoRNA GM12878 (Cell line)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 37152.00 3.73 95.81 100.0 B4GALNT2-202 protein coding GM12878 (Cell line)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 697898.00 69.99 1799.78 81.2 B4GALNT2-202 protein coding GM12878 (Cell line)