ENCFF000KFO

Library Details

Organism: Homo Sapiens
Biosample: skeletal muscle satellite cell (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CUZ
Description: Part of ENCODE experiment ENCSR000CUZ. The libraries contained in this experiment come from skeletal muscle myosatellite cells isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 1402.00 0.48 150.83 100.0 SNHG29-232 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 875.00 0.30 94.13 100.0 SNHG29-232 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 3.00 10.34 0.32 100.0 SNHG14-234 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 1775.00 17.47 190.95 100.0 SNHG1-248 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 512.00 5.04 55.08 100.0 SNHG1-248 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 3688.00 36.29 396.75 100.0 SNHG1-248 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 221.00 2.84 23.78 100.0 SNHG5-273 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 2018.00 25.96 217.10 71.26 SNHG5-273 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 3702.00 47.63 398.26 87.04 SNHG5-273 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 340.00 86.51 36.58 100.0 SNHG14-336 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 629.00 68.22 67.67 100.0 NCL-216 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 3659.54 46.83 393.69 63.4 SNHG19-202 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 2057.67 26.33 221.36 40.69 SNHG19-202 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 451.00 38.55 48.52 100.0 SNHG8-214 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 253.00 51.42 27.22 100.0 ENST00000722183 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000747512.1 ENST00000747512.1_63_156_+ 63–156 1.00 50.00 0.11 100.0 ENST00000747512 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 1.00 0.04 0.11 100.0 ENST00000772672 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 2454.00 91.19 264.00 100.0 ENST00000772672 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 4.00 1.85 0.43 11.43 ENST00000823279 lncRNA skeletal muscle satellite cell (Primary cell)