ENCFF000KFO

Library Details

Organism: Homo Sapiens
Biosample: skeletal muscle satellite cell (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CUZ
Description: Part of ENCODE experiment ENCSR000CUZ. The libraries contained in this experiment come from skeletal muscle myosatellite cells isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 2630.00 55.64 282.94 65.26 HSPA8-211 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 591.00 75.19 63.58 100.0 RPS13-208 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 3931.00 84.61 422.90 100.0 HSPA8-215 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 324.00 68.21 34.86 100.0 RPL4-214 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 76.00 12.90 8.18 100.0 ENST00000570843 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 300.00 50.93 32.27 100.0 ENST00000570843 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 2.00 0.44 0.22 100.0 SNORD3C-201 snoRNA skeletal muscle satellite cell (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 0.95 0.18 0.10 95.15 C19orf48P-203 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 0.86 0.16 0.09 86.48 C19orf48P-203 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 327.00 61.93 35.18 100.0 C19orf48P-203 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 24.00 9.41 2.58 100.0 RPS11-206 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 1303.00 63.72 140.18 100.0 NOP56-219 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 9.43 0.36 1.01 29.48 U2.3-201 snRNA skeletal muscle satellite cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 1330.00 51.04 143.08 100.0 U2.3-201 snRNA skeletal muscle satellite cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 19.22 0.74 2.07 60.08 U2.3-201 snRNA skeletal muscle satellite cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 0.87 0.03 0.09 28.97 U2.3-201 snRNA skeletal muscle satellite cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 1.55 0.06 0.17 51.75 U2.3-201 snRNA skeletal muscle satellite cell (Primary cell)
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 3.00 2.21 0.32 100.0 SNHG14-224 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 2079.00 0.73 223.66 100.0 GAS5-230 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 101617.00 35.79 10931.95 92.88 GAS5-230 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 472.00 0.17 50.78 100.0 GAS5-230 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 94767.00 33.38 10195.03 71.64 GAS5-230 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 1690.00 73.73 181.81 100.0 ENST00000651540 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 6184.00 2.11 665.27 98.93 SNHG29-232 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 258457.00 88.15 27804.79 92.96 SNHG29-232 lncRNA skeletal muscle satellite cell (Primary cell)