ENCFF000JEH

Library Details

Organism: Homo Sapiens
Biosample: fibroblast of the aortic adventitia (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CUV
Description: Part of ENCODE experiment ENCSR000CUV. The libraries contained in this experiment come from aortic adventital fibroblast primary whole cells, HAoAF isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 303323.00 79.18 20831.44 87.9 SNHG29-232 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 1251.00 0.33 85.92 100.0 SNHG29-232 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 1006.00 0.26 69.09 100.0 SNHG29-232 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 1.00 0.63 0.07 100.0 SNHG14-234 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000655143.1 ENST00000655143.1_2_94_+ 2–94 3.00 1.89 0.21 100.0 SNHG14-234 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000663945.1 ENST00000663945.1_3_89_+ 3–89 3.00 42.86 0.21 100.0 SNHG14-288 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 3889.00 31.96 267.09 100.0 SNHG1-248 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 1715.00 14.09 117.78 100.0 SNHG1-248 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 2352.00 19.33 161.53 100.0 SNHG1-248 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 558.00 3.31 38.32 100.0 SNHG5-273 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 5035.00 29.84 345.79 78.6 SNHG5-273 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 8148.00 48.29 559.58 88.85 SNHG5-273 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 2.00 0.01 0.14 100.0 SNHG5-273 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 413.00 72.33 28.36 100.0 SNHG14-336 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 1473.00 69.15 101.16 100.0 NCL-216 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 9302.24 56.58 638.85 85.0 SNHG19-202 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 1675.10 10.19 115.04 24.84 SNHG19-202 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 557.00 42.39 38.25 100.0 SNHG8-214 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 1493.00 77.36 102.54 100.0 ENST00000722183 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000747512.1 ENST00000747512.1_63_156_+ 63–156 16.00 84.21 1.10 100.0 ENST00000747512 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 13913.00 88.25 955.51 100.0 ENST00000772672 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000788343.1 ENST00000788343.1_17_107_+ 17–107 1.00 2.44 0.07 33.33 ENST00000788343 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 9.00 1.08 0.62 5.26 ENST00000823279 lncRNA fibroblast of the aortic adventitia (Primary cell)