ENCFF000JEH

Library Details

Organism: Homo Sapiens
Biosample: fibroblast of the aortic adventitia (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CUV
Description: Part of ENCODE experiment ENCSR000CUV. The libraries contained in this experiment come from aortic adventital fibroblast primary whole cells, HAoAF isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 2.00 0.69 0.14 50.0 WDR74-204 protein coding fibroblast of the aortic adventitia (Primary cell)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 2982.00 59.38 204.80 73.07 HSPA8-211 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 1664.00 85.42 114.28 100.0 RPS13-208 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 3415.00 82.45 234.53 100.0 HSPA8-215 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 2.00 0.23 0.14 100.0 ENST00000554988 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 2929.00 76.48 201.16 100.0 RPL4-214 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 169.00 42.04 11.61 100.0 ENST00000570843 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 96.00 23.88 6.59 100.0 ENST00000570843 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 1.90 0.07 0.13 47.58 C19orf48P-203 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 6.05 0.24 0.42 86.48 C19orf48P-203 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 1889.00 73.33 129.73 100.0 C19orf48P-203 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 259.00 28.49 17.79 100.0 RPS11-206 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 244.00 35.57 16.76 100.0 NOP56-219 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 5.81 0.26 0.40 52.78 U2.3-201 snRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 1181.00 52.51 81.11 100.0 U2.3-201 snRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 6.41 0.28 0.44 58.26 U2.3-201 snRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 0.87 0.04 0.06 14.49 U2.3-201 snRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 4.66 0.21 0.32 77.63 U2.3-201 snRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 41.00 8.01 2.82 100.0 SNHG14-224 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 441.00 0.09 30.29 100.0 GAS5-230 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 332399.00 68.79 22828.30 96.18 GAS5-230 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 754.00 0.16 51.78 100.0 GAS5-230 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 40150.00 8.31 2757.40 86.22 GAS5-230 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 1881.00 71.36 129.18 100.0 ENST00000651540 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 25696.00 6.71 1764.73 99.79 SNHG29-232 lncRNA fibroblast of the aortic adventitia (Primary cell)