ENCFF000JEH

Library Details

Organism: Homo Sapiens
Biosample: fibroblast of the aortic adventitia (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CUV
Description: Part of ENCODE experiment ENCSR000CUV. The libraries contained in this experiment come from aortic adventital fibroblast primary whole cells, HAoAF isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 37.00 22.02 2.54 77.08 RNU5A-1-201 snRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 38.51 22.92 2.64 57.47 RNU5A-1-201 snRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 21.49 12.79 1.48 40.55 RNU5A-1-201 snRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 8.00 1.74 0.55 100.0 7SK.1-201 misc RNA fibroblast of the aortic adventitia (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 162.00 35.14 11.13 100.0 7SK.1-201 misc RNA fibroblast of the aortic adventitia (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 5.00 0.44 0.34 100.0 SNORD83A-201 snoRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 9.00 0.79 0.62 100.0 SNORD83A-201 snoRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 2968.00 57.74 203.83 100.0 SNORD12B-201 snoRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 1308.00 25.45 89.83 100.0 SNORD12B-201 snoRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 8930.00 88.99 613.29 100.0 SNHG3-202 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 2137.00 69.18 146.76 100.0 SNORD124-201 snoRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 1503.00 41.42 103.22 51.9 RPL3-212 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 5.00 0.14 0.34 100.0 RPL3-212 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 396.00 2.79 27.20 100.0 RPL13A-212 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 9357.00 66.02 642.61 100.0 RPL13A-212 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 4259.00 41.51 292.50 100.0 RPL7A-207 protein coding CDS not defined fibroblast of the aortic adventitia (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 4482.00 43.69 307.81 100.0 RPL7A-207 protein coding CDS not defined fibroblast of the aortic adventitia (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 5.00 0.08 0.34 100.0 RABGGTB-213 protein coding CDS not defined fibroblast of the aortic adventitia (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 2519.00 39.43 173.00 100.0 RABGGTB-213 protein coding CDS not defined fibroblast of the aortic adventitia (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 1249.00 19.55 85.78 100.0 RABGGTB-213 protein coding CDS not defined fibroblast of the aortic adventitia (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 11.00 0.00 0.76 100.0 RPL5-205 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 253013.00 98.26 17376.28 99.55 RPL5-205 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 37.00 5.41 2.54 100.0 RACK1-230 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 31532.00 81.97 2165.54 100.0 SNHG6-204 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 3721.00 9.67 255.55 100.0 SNHG6-204 retained intron fibroblast of the aortic adventitia (Primary cell)