ENCFF000KEF

Library Details

Organism: Homo Sapiens
Biosample: melanocyte of skin (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVK
Description: Part of ENCODE experiment ENCSR000CVK. RNA-seq on human skin melanocytes primary whole cells (NHEM.f-M2) from rRNA-depleted Total RNA greater than 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 13.97 0.08 0.86 69.87 U2.3-201 snRNA melanocyte of skin (Primary cell)
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 11.00 3.89 0.68 100.0 SNHG14-224 lncRNA melanocyte of skin (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 1047.00 0.30 64.61 100.0 GAS5-230 retained intron melanocyte of skin (Primary cell)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 145140.00 41.11 8956.82 93.3 GAS5-230 retained intron melanocyte of skin (Primary cell)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 684.00 0.19 42.21 100.0 GAS5-230 retained intron melanocyte of skin (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 104658.00 29.64 6458.61 68.85 GAS5-230 retained intron melanocyte of skin (Primary cell)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 4.00 0.05 0.25 100.0 ENST00000651540 lncRNA melanocyte of skin (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 5406.00 69.84 333.61 100.0 ENST00000651540 lncRNA melanocyte of skin (Primary cell)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 113523.00 13.66 7005.68 97.65 SNHG29-232 lncRNA melanocyte of skin (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 678511.00 81.62 41871.99 97.63 SNHG29-232 lncRNA melanocyte of skin (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 1770.00 0.21 109.23 100.0 SNHG29-232 lncRNA melanocyte of skin (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 2417.00 0.29 149.16 100.0 SNHG29-232 lncRNA melanocyte of skin (Primary cell)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 4.00 4.94 0.25 100.0 SNHG14-234 lncRNA melanocyte of skin (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 3460.00 26.45 213.52 100.0 SNHG1-248 lncRNA melanocyte of skin (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 1209.00 9.24 74.61 100.0 SNHG1-248 lncRNA melanocyte of skin (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 4259.00 32.56 262.83 100.0 SNHG1-248 lncRNA melanocyte of skin (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 886.00 3.67 54.68 100.0 SNHG5-273 lncRNA melanocyte of skin (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 6332.00 26.24 390.76 76.34 SNHG5-273 lncRNA melanocyte of skin (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 12164.00 50.40 750.66 90.59 SNHG5-273 lncRNA melanocyte of skin (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 265.00 82.81 16.35 100.0 SNHG14-336 lncRNA melanocyte of skin (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 4286.00 60.98 264.50 100.0 NCL-216 retained intron melanocyte of skin (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 3268.88 49.47 201.73 69.26 SNHG19-202 lncRNA melanocyte of skin (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 1525.96 23.09 94.17 35.59 SNHG19-202 lncRNA melanocyte of skin (Primary cell)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 1394.00 36.38 86.03 100.0 SNHG8-214 lncRNA melanocyte of skin (Primary cell)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 4084.00 77.48 252.03 100.0 ENST00000722183 lncRNA melanocyte of skin (Primary cell)