ENCFF000KEF

Library Details

Organism: Homo Sapiens
Biosample: melanocyte of skin (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVK
Description: Part of ENCODE experiment ENCSR000CVK. RNA-seq on human skin melanocytes primary whole cells (NHEM.f-M2) from rRNA-depleted Total RNA greater than 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 36.00 7.45 2.22 43.37 RNU5A-1-201 snRNA melanocyte of skin (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 18.19 3.77 1.12 31.36 RNU5A-1-201 snRNA melanocyte of skin (Primary cell)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 37.75 7.82 2.33 36.65 RNU5A-1-201 snRNA melanocyte of skin (Primary cell)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 3.00 0.62 0.19 100.0 RNU5A-1-201 snRNA melanocyte of skin (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 547.00 24.14 33.76 100.0 7SK.1-201 misc RNA melanocyte of skin (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 3.00 0.13 0.19 100.0 7SK.1-201 misc RNA melanocyte of skin (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 36.00 1.55 2.22 100.0 SNORD83A-201 snoRNA melanocyte of skin (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 8.00 0.34 0.49 100.0 SNORD83A-201 snoRNA melanocyte of skin (Primary cell)
ENST00000387459.1 ENST00000387459.1_1_69_+ 1–69 1.00 2.17 0.06 100.0 MT-TE-201 Mt tRNA melanocyte of skin (Primary cell)
ENST00000389680.2 ENST00000389680.2_2_90_+ 2–90 1.00 0.01 0.06 100.0 MT-RNR1-201 Mt rRNA melanocyte of skin (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 667.00 17.20 41.16 100.0 SNORD12B-201 snoRNA melanocyte of skin (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 2472.00 63.74 152.55 100.0 SNORD12B-201 snoRNA melanocyte of skin (Primary cell)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 2.00 0.53 0.12 100.0 SNORD62B-201 snoRNA melanocyte of skin (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 10440.00 90.46 644.27 100.0 SNHG3-202 retained intron melanocyte of skin (Primary cell)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 2.00 2.02 0.12 100.0 SNORD127-201 snoRNA melanocyte of skin (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 1315.00 67.68 81.15 100.0 SNORD124-201 snoRNA melanocyte of skin (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 1338.00 50.07 82.57 67.07 RPL3-212 retained intron melanocyte of skin (Primary cell)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 67.00 2.51 4.13 100.0 RPL3-212 retained intron melanocyte of skin (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 22981.00 89.87 1418.19 100.0 RPL13A-212 retained intron melanocyte of skin (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 248.00 0.97 15.30 100.0 RPL13A-212 retained intron melanocyte of skin (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 11410.00 64.69 704.13 100.0 RPL7A-207 protein coding CDS not defined melanocyte of skin (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 4011.00 22.74 247.53 100.0 RPL7A-207 protein coding CDS not defined melanocyte of skin (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 2313.00 39.13 142.74 100.0 RABGGTB-213 protein coding CDS not defined melanocyte of skin (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 920.00 15.56 56.77 100.0 RABGGTB-213 protein coding CDS not defined melanocyte of skin (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 26.00 0.44 1.60 100.0 RABGGTB-213 protein coding CDS not defined melanocyte of skin (Primary cell)