ENCFF000KEF

Library Details

Organism: Homo Sapiens
Biosample: melanocyte of skin (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVK
Description: Part of ENCODE experiment ENCSR000CVK. RNA-seq on human skin melanocytes primary whole cells (NHEM.f-M2) from rRNA-depleted Total RNA greater than 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 313055.00 98.53 19319.12 99.58 RPL5-205 retained intron melanocyte of skin (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 49.00 0.02 3.02 100.0 RPL5-205 retained intron melanocyte of skin (Primary cell)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 40.00 6.47 2.47 100.0 RACK1-230 retained intron melanocyte of skin (Primary cell)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 1.00 0.73 0.06 100.0 RNY4-201 misc RNA melanocyte of skin (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 1908.00 4.39 117.75 100.0 SNHG6-204 retained intron melanocyte of skin (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 38580.00 88.73 2380.83 100.0 SNHG6-204 retained intron melanocyte of skin (Primary cell)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 8.00 0.47 0.49 44.44 WDR74-204 protein coding melanocyte of skin (Primary cell)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 832.00 50.09 51.34 67.31 HSPA8-211 retained intron melanocyte of skin (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 2204.00 85.56 136.01 100.0 RPS13-208 retained intron melanocyte of skin (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 10561.00 86.69 651.74 100.0 HSPA8-215 retained intron melanocyte of skin (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 1135.00 65.84 70.04 100.0 RPL4-214 retained intron melanocyte of skin (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 592.00 22.12 36.53 100.0 ENST00000570843 lncRNA melanocyte of skin (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 1433.00 53.55 88.43 100.0 ENST00000570843 lncRNA melanocyte of skin (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 1.90 0.15 0.12 63.44 C19orf48P-203 retained intron melanocyte of skin (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 0.86 0.07 0.05 86.48 C19orf48P-203 retained intron melanocyte of skin (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 726.00 58.03 44.80 100.0 C19orf48P-203 retained intron melanocyte of skin (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 62.00 10.84 3.83 100.0 RPS11-206 retained intron melanocyte of skin (Primary cell)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 9.00 0.51 0.56 100.0 ENST00000602478 lncRNA melanocyte of skin (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 1098.00 45.20 67.76 100.0 NOP56-219 retained intron melanocyte of skin (Primary cell)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 2.00 0.01 0.12 100.0 U2.3-201 snRNA melanocyte of skin (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 89.99 0.54 5.55 41.28 U2.3-201 snRNA melanocyte of skin (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 8058.00 48.00 497.27 100.0 U2.3-201 snRNA melanocyte of skin (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 60.00 0.36 3.70 68.97 U2.3-201 snRNA melanocyte of skin (Primary cell)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 122.55 0.73 7.56 56.22 U2.3-201 snRNA melanocyte of skin (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 14.78 0.09 0.91 36.94 U2.3-201 snRNA melanocyte of skin (Primary cell)