ENCFF000KEC

Library Details

Organism: Homo Sapiens
Biosample: melanocyte of skin (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVK
Description: Part of ENCODE experiment ENCSR000CVK. RNA-seq on human skin melanocytes primary whole cells (NHEM.f-M2) from rRNA-depleted Total RNA greater than 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 113.74 0.43 10.07 60.18 U2.3-201 snRNA melanocyte of skin (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 11.30 0.04 1.00 33.24 U2.3-201 snRNA melanocyte of skin (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 12.42 0.05 1.10 42.83 U2.3-201 snRNA melanocyte of skin (Primary cell)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 1.00 0.06 0.09 100.0 U2.6-201 snRNA melanocyte of skin (Primary cell)
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 10.00 4.00 0.89 100.0 SNHG14-224 lncRNA melanocyte of skin (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 1153.00 0.35 102.04 100.0 GAS5-230 retained intron melanocyte of skin (Primary cell)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 128663.00 38.53 11386.73 92.34 GAS5-230 retained intron melanocyte of skin (Primary cell)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 575.00 0.17 50.89 100.0 GAS5-230 retained intron melanocyte of skin (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 95668.00 28.65 8466.66 69.3 GAS5-230 retained intron melanocyte of skin (Primary cell)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 3.00 0.06 0.27 100.0 ENST00000651540 lncRNA melanocyte of skin (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 3381.00 65.32 299.22 100.0 ENST00000651540 lncRNA melanocyte of skin (Primary cell)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 31369.00 11.07 2776.17 98.04 SNHG29-232 lncRNA melanocyte of skin (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 235412.00 83.10 20834.06 96.34 SNHG29-232 lncRNA melanocyte of skin (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 1292.00 0.46 114.34 100.0 SNHG29-232 lncRNA melanocyte of skin (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 201.00 0.07 17.79 100.0 SNHG29-232 lncRNA melanocyte of skin (Primary cell)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 3.00 0.25 0.27 100.0 ENST00000655317 lncRNA melanocyte of skin (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 2558.00 24.32 226.38 100.0 SNHG1-248 lncRNA melanocyte of skin (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 839.00 7.98 74.25 100.0 SNHG1-248 lncRNA melanocyte of skin (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 3213.00 30.54 284.35 100.0 SNHG1-248 lncRNA melanocyte of skin (Primary cell)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 1.00 0.37 0.09 100.0 SNHG14-315 lncRNA melanocyte of skin (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 420.00 2.83 37.17 100.0 SNHG5-273 lncRNA melanocyte of skin (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 4334.00 29.19 383.56 60.24 SNHG5-273 lncRNA melanocyte of skin (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 5112.00 34.42 452.41 85.66 SNHG5-273 lncRNA melanocyte of skin (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 349.00 73.63 30.89 100.0 SNHG14-336 lncRNA melanocyte of skin (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 938.00 37.16 83.01 100.0 NCL-216 retained intron melanocyte of skin (Primary cell)