ENCFF000KEC

Library Details

Organism: Homo Sapiens
Biosample: melanocyte of skin (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVK
Description: Part of ENCODE experiment ENCSR000CVK. RNA-seq on human skin melanocytes primary whole cells (NHEM.f-M2) from rRNA-depleted Total RNA greater than 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 40.00 3.68 3.54 100.0 RACK1-230 retained intron melanocyte of skin (Primary cell)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 3.00 2.48 0.27 100.0 RNY4-201 misc RNA melanocyte of skin (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 1431.00 5.62 126.64 100.0 SNHG6-204 retained intron melanocyte of skin (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 21590.00 84.77 1910.72 100.0 SNHG6-204 retained intron melanocyte of skin (Primary cell)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 14.00 1.27 1.24 66.67 WDR74-204 protein coding melanocyte of skin (Primary cell)
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 1.00 0.09 0.09 100.0 WDR74-204 protein coding melanocyte of skin (Primary cell)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 3.00 0.04 0.27 100.0 HSPA8-211 retained intron melanocyte of skin (Primary cell)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 3050.00 43.97 269.93 62.59 HSPA8-211 retained intron melanocyte of skin (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 1698.00 84.77 150.27 100.0 RPS13-208 retained intron melanocyte of skin (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 5407.00 85.10 478.52 100.0 HSPA8-215 retained intron melanocyte of skin (Primary cell)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 1.00 0.02 0.09 100.0 HSPA8-215 retained intron melanocyte of skin (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 1043.00 63.44 92.31 100.0 RPL4-214 retained intron melanocyte of skin (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 267.00 16.33 23.63 100.0 ENST00000570843 lncRNA melanocyte of skin (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 884.00 54.07 78.23 100.0 ENST00000570843 lncRNA melanocyte of skin (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 0.95 0.05 0.08 19.03 C19orf48P-203 retained intron melanocyte of skin (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 2.59 0.13 0.23 86.48 C19orf48P-203 retained intron melanocyte of skin (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 1114.00 54.99 98.59 100.0 C19orf48P-203 retained intron melanocyte of skin (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 50.00 10.18 4.43 100.0 RPS11-206 retained intron melanocyte of skin (Primary cell)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 12.00 0.92 1.06 100.0 ENST00000602478 lncRNA melanocyte of skin (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 982.00 43.05 86.91 100.0 NOP56-219 retained intron melanocyte of skin (Primary cell)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 1.00 0.00 0.09 100.0 U2.3-201 snRNA melanocyte of skin (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 78.38 0.29 6.94 41.47 U2.3-201 snRNA melanocyte of skin (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 5.00 0.02 0.44 71.43 U2.3-201 snRNA melanocyte of skin (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 15712.00 59.05 1390.52 100.0 U2.3-201 snRNA melanocyte of skin (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 34.00 0.13 3.01 69.39 U2.3-201 snRNA melanocyte of skin (Primary cell)